Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: Hybrid

SASDNA2 – Glyceraldehyde-3-phosphate dehydrogenase (apo-kmGAPDH1p) upon NAD+ binding

Glyceraldehyde-3-phosphate dehydrogenase 1 bound to NAD+ experimental SAS data

Sample:	Glyceraldehyde-3-phosphate dehydrogenase 1 bound to NAD+ tetramer, 142 kDa Kluyveromyces marxianus protein
Buffer:	150 mM NaCl, 1 mM beta-mercaptoethanol, 1 mM EDTA, 10 mM TrisHCl, pH: 7.5
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2006 Mar 27

The Crystal and Solution Structures of Glyceraldehyde-3-phosphate Dehydrogenase Reveal Different Quaternary Structures Journal of Biological Chemistry 281(44):33433-33440 (2006)
Ferreira-da-Silva F, Pereira P, Gales L, Roessle M, Svergun D, Moradas-Ferreira P, Damas A

R_g^Guinier	3.7	nm
D_max	9.9	nm
Volume^Porod	202	nm³

SASDN63 – Microtubule affinity regulating kinase (isoform MARK2, T208E point mutant)

Serine/threonine-protein kinase MARK2 experimental SAS data

Sample:	Serine/threonine-protein kinase MARK2 monomer, 36 kDa Homo sapiens protein
Buffer:	0.1 M Bis-Tris, 0.2 M ammonium citrate, 1mM DTT, pH: 6.5
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2006 May 16

Structural Variations in the Catalytic and Ubiquitin-associated Domains of Microtubule-associated Protein/Microtubule Affinity Regulating Kinase (MARK) 1 and MARK2 Journal of Biological Chemistry 281(37):27586-27599 (2006)
Marx A, Nugoor C, Müller J, Panneerselvam S, Timm T, Bilang M, Mylonas E, Svergun D, Mandelkow E, Mandelkow E

R_g^Guinier	2.4	nm
D_max	8.0	nm
Volume^Porod	61	nm³

SASDN73 – Microtubule affinity regulating kinase (isoform MARK2, wild type)

Sample:	Serine/threonine-protein kinase MARK2 monomer, 36 kDa Homo sapiens protein
Buffer:	0.1 M Bis-Tris, 0.2 M ammonium citrate, 1mM DTT, pH: 6.5
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2006 May 16

R_g^Guinier	2.3	nm
D_max	8.0	nm
Volume^Porod	62	nm³

SASDN83 – Microtubule affinity regulating kinase (isoform MARK1)

Serine/threonine-protein kinase MARK1 experimental SAS data

Sample:	Serine/threonine-protein kinase MARK1 monomer, 37 kDa Homo sapiens protein
Buffer:	0.1 M Bis-Tris, 0.2 M ammonium citrate, 1mM DTT, pH: 6.5
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2006 May 16

R_g^Guinier	2.3	nm
D_max	8.0	nm
Volume^Porod	64	nm³

SASDAR4 – PTB full

Polypyrimidine tract-binding protein 1 experimental SAS data

Sample:	Polypyrimidine tract-binding protein 1 monomer, 57 kDa Homo sapiens protein
Buffer:	25 mM Tris 100 mM NaCl 5.0 mM DTT, pH: 7.2
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2004 Feb 11

Conformation of polypyrimidine tract binding protein in solution. Structure 14(6):1021-7 (2006)
Petoukhov MV, Monie TP, Allain FH, Matthews S, Curry S, Svergun DI

R_g^Guinier	4.0	nm
D_max	16.5	nm

SASDN93 – Dystrophiamyotonica kinase (DMPK)

Myotonin-protein kinase experimental SAS data

Sample:	Myotonin-protein kinase monomer, 92 kDa Homo sapiens protein
Buffer:	50 mM TrisHCl 50mM NaCl, 2.5 mM-mercaptoethanol, pH: 8
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2005 Mar 18

Molecular insights into the self‐assembly mechanism of dystrophia myotonica kinase The FASEB Journal 20(8):1142-1151 (2006)
Garcia P, Ucurum Z, Bucher R, Svergun D, Huber T, Lustig A, Konarev P, Marino M, Mayans O

R_g^Guinier	3.9	nm
D_max	13.0	nm
Volume^Porod	173	nm³

SASDAD4 – Full length GtBP3

Sample:	Full length CtBP3 tetramer, 170 kDa protein
Buffer:	25 mM Tris/HCl 250 mM NaCl, pH: 8
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2004 Nov 18

The C-terminal domain of the transcriptional corepressor CtBP is intrinsically unstructured. Protein Sci 15(5):1042-50 (2006)
Nardini M, Svergun D, Konarev PV, Spanò S, Fasano M, Bracco C, Pesce A, Donadini A, Cericola C, Secundo F, Luini A, Corda D, Bolognesi M

R_g^Guinier	5.1	nm
D_max	19.0	nm
Volume^Porod	330	nm³

SASDAE4 – C-terminal CtBP3

Sample:	C-term part CtBP3 dimer, 52 kDa protein
Buffer:	25 mM Tris/HCl 250 mM NaCl, pH: 8
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2004 Nov 18

R_g^Guinier	5.5	nm
D_max	20.0	nm
Volume^Porod	126	nm³

SASDLP7 – Two-chain hepatocyte growth factor/scatter factor in complex with receptor tyrosine kinase MET

Hepatocyte growth factorHepatocyte growth factor receptor experimental SAS data

Sample:	Hepatocyte growth factor monomer, 79 kDa Mus musculus protein Hepatocyte growth factor receptor monomer, 100 kDa Mus musculus protein
Buffer:	50 mM MES, 150 mM NaCl, pH: 6.7
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2004 Feb 9

Structural basis of hepatocyte growth factor/scatter factor and MET signalling Proceedings of the National Academy of Sciences 103(11):4046-4051 (2006)
Gherardi E, Sandin S, Petoukhov M, Finch J, Youles M, Ofverstedt L, Miguel R, Blundell T, Vande Woude G, Skoglund U, Svergun D

R_g^Guinier	6.7	nm
D_max	20.0	nm
Volume^Porod	370	nm³

SASDLQ7 – receptor tyrosine kinase MET

Hepatocyte growth factor receptor experimental SAS data

Sample:	Hepatocyte growth factor receptor monomer, 100 kDa Mus musculus protein
Buffer:	50 mM MES, 150 mM NaCl, pH: 6.7
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2004 Feb 7

R_g^Guinier	4.8	nm
D_max	16.0	nm
Volume^Porod	190	nm³

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