{"code":"SASDA58","status":"Published","type_of_curve":"Single concentration","angular_unit":"1/nm","project":{"title":"Dimerization-Induced Allosteric Changes of the Oxyanion-Hole Loop Activate the Pseudorabies Virus Assemblin pUL26N, a Herpesvirus Serine Protease.","publication":{"title":"Dimerization-Induced Allosteric Changes of the Oxyanion-Hole Loop Activate the Pseudorabies Virus Assemblin pUL26N, a Herpesvirus Serine Protease.","author_list":"Zühlsdorf M, Werten S, Klupp BG, Palm GJ, Mettenleiter TC, Hinrichs W","journal":"PLoS Pathog","doi":"10.1371/journal.ppat.1005045","pmid":"26161660","published_date":"2015 Jul"},"status":"released","submitted_date":"2015-04-25","released_date":"2015-07-17"},"pddf_data":"https://www.sasbdb.org/media/p_of_R_files/SASDA58.out","intensities_data":"https://www.sasbdb.org/media/intensities_files/SASDA58.dat","intensities_log_plot":"https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA58_dat_img.png","intensities_kratky_plot":"https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA58_kratky_img.png","pddf_plot":"https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDA58_pofr_img.png","intensities_guinier_plot":"https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA58_guinier_img.png","sascif_data":"https://www.sasbdb.org/media/sascif/sascif_files/SASDA58.sascif","experiment":{"instrument":{"detector":{"type":null,"name":"Pilatus 2M","resolution":null},"name":"PETRA III","city":"DESY; Hamburg","country":"Germany","beamline_name":"EMBL P12","beam_geometry":null,"type_of_source":"X-ray synchrotron","point_source":null,"line_collimation":null,"sample_path_length":null,"line_collimation_slitlength":null,"line_collimation_integrationwidth":null,"xray_energy":null,"beam_profile_ah":null,"beam_profile_al":null},"sample":{"molecule":[{"long_name":"VP24","short_name":"UL26N","sequence":"MGSSHHHHHHSSGLVPRGSHMGPVYVSGYLALYDRDGGELALTREIVAAALPPAGPLPINIDHRPRCDIGAVLAVVDDDRGPFFLGVVNCPQLGAVLARAVGPDFFGDMRLSDEERLLYLLSNYLPSASLSSRRLAPGEAPDETLFAHVALCVIGRRVGTIVVYDASPEAAVAPFRQLSARARSELLARAAESPDRERVWHMSEEALTRALLSTAVNNMLLRDRWELVAARRREAGVRGHTYLQ","organism":"Suid herpesvirus 1","uniprot_code":"Q83417","uniprot_range_first":1,"uniprot_range_last":224,"oligomerization":"dimer","molecular_type":"protein","uniprot_sequence":"MGPVYVSGYLALYDRDGGELALTREIVAAALPPAGPLPINIDHRPRCDIGAVLAVVDDDR\nGPFFLGVVNCPQLGAVLARAVGPDFFGDMRLSDEERLLYLLSNYLPSASLSSRRLAPGEA\nPDETLFAHVALCVIGRRVGTIVVYDASPEAAVAPFRQLSARARSELLARAAESPDRERVW\nHMSEEALTRALLSTAVNNMLLRDRWELVAARRREAGVRGHTYLQATMWAGLLPKSGASPA\nPGPSAAMAAPPSAAPGDYIFVPAAQYNQLVVNQRPAPSLESQLGAIVSAAMDRRHRRSPS\nPEPRPPARKRRYDDYAQDNAYYPGEAPPPASDLAAVVSSLQREISHLRAQQLRYPTPYYA\nPAAPPQLLPPGAVVGHPHPHHAAGALYPPMYAPQPGLHAPPPSPVAHAVPALPGLPGLQG\nLAAPVAHVPAQVVPQQPVVVQAQPVAVPAAAAAAPAPAPAAAAAAAAPVQAAAPAAPASA\nPQPPVQASVSAPADVSAGTIDASSAAVACQRGADIFVSQMMSQR","mw":26.608,"total_mw":53.216,"number_molecules":2,"complex_state":false,"deuteration":null,"molecule_source":"biological","molecule_description":null}],"buffer":{"name":"50 mM Tris/HCl 0.5 M NaCl 0.25 M imidazole 5% glycerol 50 mM urea 0.2 M MgCl2","concentration_unit":"mM","comment":null,"additive":"0.5 M NaCl, 0.25 M imidazole, 5% glycerol, 50 mM urea, 0.2 M MgCl2","concentration":50.0,"pka":null,"ph":7.5,"deuteration":null},"purity_method":null,"name":"UL26N of pseudorabies virus","ext_coefficient":null,"contrast":null,"specific_vol":null,"dry_vol":null,"absorbption":null,"deuteration":null,"mixture":null},"contributor":[{"affiliation":[{"short_name":null,"address":"Domstraße 11 17489 Greifswald","full_name":"Ernst-Moritz-Arndt-Universität Greifswald","webpage":"http://www.uni-greifswald.de/"}],"contributor_name":"Sebastiaan","contributor_surname":"Werten","orcid":null}],"concentration_method":null,"concentration_unit":"mg/ml","date":"2013-09-23","storage_temperature":null,"cell_temperature":10.0,"exposure_time":0.05,"number_of_frames":20,"wavelength":0.12,"sample_detector_distance":3.1,"concentration_min":null,"concentration_max":9.83,"sample_volume":null,"flow_rate":null,"s_min":0.068,"s_max":4.437,"total_exposure_time":null,"seccolumn":null},"fits":[{"models":[{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDA58_fit1_model1_img.png","software":"PDB (Protein Data Bank)","pdb_link":[{"pdb_code":"4v07","ext_code":"4V07","ext_type":"pdb","difference_with_model":"identical"}],"model_title":null,"type_of_model":"atomic","software_version":"","model_data":"https://www.sasbdb.org/media/pdb_file/SASDA58_fit1_model1.pdb","model_mw":47.55,"bead_radius":null,"log":null,"symmetry":"","comment":"","user":60}],"fit_unit":"1/A","fit_plot":"https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDA58_fit1_fit_img.png","software":null,"chi_square_value":1.288,"p_value":0.000196,"fit_residual_plot":"SASDA58_fit1_fitresiduals_img.png","fit_data":"https://www.sasbdb.org/media/fitting_files/SASDA58_fit1.fit","fit_log":null,"software_version":null,"description":null},{"models":[{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDA58_fit2_model1_img.png","software":"DAMMIN","pdb_link":[],"model_title":null,"type_of_model":"dummy","software_version":"","model_data":"https://www.sasbdb.org/media/pdb_file/SASDA58_fit2_model1.pdb","model_mw":46.78,"bead_radius":2.25,"log":"https://www.sasbdb.org/media/log_files/UL26N.log","symmetry":"","comment":"","user":60}],"fit_unit":"1/A","fit_plot":"https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDA58_fit2_fit_img.png","software":null,"chi_square_value":1.196,"p_value":0.58613,"fit_residual_plot":"SASDA58_fit2_fitresiduals_img.png","fit_data":"https://www.sasbdb.org/media/fitting_files/SASDA58_fit2.fir","fit_log":null,"software_version":null,"description":null}],"estimated_volume_method":null,"pddf_software":"ATSAS GNOM","pddf_software_version":null,"i0_calibration_standard":null,"description":null,"experiment_description":null,"tags":[],"intensity_unit":null,"experimental_mw":45.0,"experimental_mw_error":null,"guinier_i0_mw":null,"guinier_i0_mw_error":null,"porod_mw":45.0,"porod_mw_error":null,"pddf_i0":2982.0,"pddf_i0_error":null,"guinier_i0":2964.0,"guinier_i0_error":null,"pddf_rg":2.69,"pddf_rg_error":null,"guinier_rg":2.62,"guinier_rg_error":null,"pddf_dmax":10.6,"pddf_dmax_error":null,"porod_volume":73.0,"porod_volume_error":null,"estimated_volume":null,"estimated_volume_error":null,"guinier_point_first":null,"guinier_point_last":null,"pddf_point_first":null,"pddf_point_last":null,"i0_calibration_standard_data":null,"intensities_log_log_plot":"SASDA58_datloglog_img.png","symmetry":null,"last_modified":"2023-06-21T07:56:39.492710+02:00","bragg_peak":[]}