{"code":"SASDBF6","status":"Published","type_of_curve":"Single concentration","angular_unit":"1/nm","project":{"title":"Structural basis of myelin-associated glycoprotein adhesion and signalling.","publication":{"title":"Structural basis of myelin-associated glycoprotein adhesion and signalling.","author_list":"Pronker MF, Lemstra S, Snijder J, Heck AJ, Thies-Weesie DM, Pasterkamp RJ, Janssen BJ","journal":"Nat Commun","doi":"10.1038/ncomms13584","pmid":"27922006","published_date":"2016 Dec 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University","webpage":"http://www.uu.nl/"}],"contributor_name":"Matti","contributor_surname":"Pronker","orcid":null}],"concentration_method":null,"concentration_unit":null,"date":"2014-09-11","storage_temperature":20.0,"cell_temperature":20.0,"exposure_time":2.0,"number_of_frames":10,"wavelength":0.0992,"sample_detector_distance":2.87,"concentration_min":null,"concentration_max":2.13,"sample_volume":null,"flow_rate":null,"s_min":0.036,"s_max":4.969,"total_exposure_time":null,"seccolumn":null},"fits":[{"models":[{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/MAG5D_refine_95-cootdimer_img.png","software":"Oligomer","pdb_link":[{"pdb_code":"5lf5","ext_code":"5LF5","ext_type":"pdb","difference_with_model":"derived"}],"model_title":null,"type_of_model":"atomic","software_version":"","model_data":"https://www.sasbdb.org/media/pdb_file/SASDBF6_fit1_model1.pdb","model_mw":110.5,"bead_radius":1.9,"log":null,"symmetry":"","comment":"","user":52}],"fit_unit":"1/A","fit_plot":"https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDBF6_fit1_fit_img.png","software":null,"chi_square_value":3.72,"p_value":0.0,"fit_residual_plot":"SASDBF6_fit1_fitresiduals_img.png","fit_data":"https://www.sasbdb.org/media/fitting_files/SASDBF6_fit1.fit","fit_log":null,"software_version":null,"description":null}],"estimated_volume_method":null,"pddf_software":"ATSAS GNOM","pddf_software_version":"Gnom 4.5a","i0_calibration_standard":null,"description":"Endo-Hf-deglycosylated full extracellular domain of Myelin-associated glycoprotein (Ig1-5).","experiment_description":"Synchrotron SAXS data from solutions of deglycosylated myelin-associated glycoprotein (Ig domains 1-5) in HEPES, pH 7.5 were collected on the BM29 camera on the storage ring ESRF (Grenoble, France) using a Pilatus 1M detector at a sample-detector distance of 2.9 m and at a wavelength of λ = 0.1 nm (I(s) vs s, where s = 4π sin θ/λ and 2θ is the scattering angle). One solute concentration of 2.13 mg/ml was measured at 20°C. 10 successive 2 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted and the curve was scaled for protein concentration.","tags":[],"intensity_unit":null,"experimental_mw":56.8,"experimental_mw_error":null,"guinier_i0_mw":75.4,"guinier_i0_mw_error":null,"porod_mw":97.0,"porod_mw_error":null,"pddf_i0":74.9,"pddf_i0_error":0.1,"guinier_i0":75.37,"guinier_i0_error":0.27,"pddf_rg":7.43,"pddf_rg_error":0.01,"guinier_rg":7.28,"guinier_rg_error":0.05,"pddf_dmax":25.5,"pddf_dmax_error":null,"porod_volume":166.2,"porod_volume_error":null,"estimated_volume":null,"estimated_volume_error":null,"guinier_point_first":9,"guinier_point_last":24,"pddf_point_first":null,"pddf_point_last":null,"i0_calibration_standard_data":null,"intensities_log_log_plot":"SASDBF6_datloglog_img.png","symmetry":null,"last_modified":"2019-12-06T13:07:15.624532+01:00","bragg_peak":[]}