{"code":"SASDDD3","status":"Published","type_of_curve":"Single concentration","angular_unit":"1/A","project":{"title":"Architectural Features of Human Mitochondrial Cysteine Desulfurase Complexes from Crosslinking Mass Spectrometry and Small-Angle X-Ray Scattering.","publication":{"title":"Architectural Features of Human Mitochondrial Cysteine Desulfurase Complexes from Crosslinking Mass Spectrometry and Small-Angle X-Ray Scattering.","author_list":"Cai K, Frederick RO, Dashti H, Markley JL","journal":"Structure","doi":"10.1016/j.str.2018.05.017","pmid":"29983374","published_date":"2018 Aug 7"},"status":"released","submitted_date":"2018-01-26","released_date":"2018-05-16"},"pddf_data":"https://www.sasbdb.org/media/p_of_R_files/SASDDD3.out","intensities_data":"https://www.sasbdb.org/media/intensities_files/SASDDD3.dat","intensities_log_plot":"https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDDD3_dat_img.png","intensities_kratky_plot":"https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDDD3_kratky_img.png","pddf_plot":"https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDDD3_pofr_img.png","intensities_guinier_plot":"https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDDD3_guinier_img.png","sascif_data":"https://www.sasbdb.org/media/sascif/sascif_files/SASDDD3.sascif","experiment":{"instrument":{"detector":{"type":"MikroGap gas detector","name":"VÅNTEC-2000","resolution":200.0},"name":"NMRFAM","city":"Madison, WI","country":"USA","beamline_name":"Bruker Nanostar","beam_geometry":null,"type_of_source":"X-ray in house","point_source":null,"line_collimation":null,"sample_path_length":null,"line_collimation_slitlength":null,"line_collimation_integrationwidth":null,"xray_energy":null,"beam_profile_ah":null,"beam_profile_al":null},"sample":{"molecule":[{"long_name":"Cysteine desulfurase, mitochondrial","short_name":"NFS1","sequence":">sp|Q9Y697|NFS1_HUMAN Cysteine desulfurase, mitochondrial OS=Homo sapiens GN=NFS1 PE=1 SV=3\r\nGPVLRPLYMDVQATTPLDPRVLDAMLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPRE\r\nIIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVQK\r\nSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKI\r\nPLDVNDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPL\r\nVVGLGAACEVAQQEMEYDHKRISKLSERLIQNIMKSLPDVVMNGDPKHHYPGCINLSFAY\r\nVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVD\r\nYTVEKCIQHVKRLREMSPLWEMVQDGIDLKSIKWTQH","organism":"Homo sapiens","uniprot_code":"Q9Y697","uniprot_range_first":53,"uniprot_range_last":457,"oligomerization":"dimer","molecular_type":"protein","uniprot_sequence":"MLLRAAWRRAAVAVTAAPGPKPAAPTRGLRLRVGDRAPQSAVPADTAAAPEVGPVLRPLY\nMDVQATTPLDPRVLDAMLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPRE\nIIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVQK\nSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKI\nPLDVNDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPL\nVVGLGAACEVAQQEMEYDHKRISKLSERLIQNIMKSLPDVVMNGDPKHHYPGCINLSFAY\nVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVD\nYTVEKCIQHVKRLREMSPLWEMVQDGIDLKSIKWTQH","mw":44.913,"total_mw":89.826,"number_molecules":2,"complex_state":false,"deuteration":null,"molecule_source":"biological","molecule_description":null},{"long_name":"LYR motif-containing protein 4","short_name":"ISD11","sequence":">sp|Q9HD34|LYRM4_HUMAN LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1\r\nMAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK\r\nRDLGVIRRQVHIGQLYSTDKLIIENRDMPRTHHHHHH","organism":"Homo sapiens","uniprot_code":"Q9HD34","uniprot_range_first":null,"uniprot_range_last":null,"oligomerization":"dimer","molecular_type":"protein","uniprot_sequence":"MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK\nRDLGVIRRQVHIGQLYSTDKLIIENRDMPRT","mw":11.581,"total_mw":23.162,"number_molecules":2,"complex_state":false,"deuteration":null,"molecule_source":"biological","molecule_description":null},{"long_name":"Acyl carrier protein","short_name":null,"sequence":"P>sp|P0A6A8|ACP_ECOLI Acyl carrier protein OS=Escherichia coli (strain K12) GN=acpP PE=1 SV=2\r\nMSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEA\r\nEKITTVQAAIDYINGHQA","organism":"Escherichia coli","uniprot_code":"P0A6A8","uniprot_range_first":null,"uniprot_range_last":null,"oligomerization":"dimer","molecular_type":"protein","uniprot_sequence":"MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEA\nEKITTVQAAIDYINGHQA","mw":11.5,"total_mw":22.0,"number_molecules":2,"complex_state":false,"deuteration":null,"molecule_source":"biological","molecule_description":null},{"long_name":"Iron-sulfur cluster assembly enzyme ISCU, mitochondrial","short_name":"ISCU","sequence":">sp|Q9H1K1|ISCU_HUMAN Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=2\r\nRLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKKGEAEKK","organism":"Homo sapiens","uniprot_code":"Q9H1K1","uniprot_range_first":33,"uniprot_range_last":167,"oligomerization":"dimer","molecular_type":"protein","uniprot_sequence":"MAAAGAFRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVG\nTGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTI\nKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKKGEAEKK","mw":14.655,"total_mw":29.31,"number_molecules":2,"complex_state":false,"deuteration":null,"molecule_source":"biological","molecule_description":null},{"long_name":"Frataxin, mitochondrial","short_name":"FXN","sequence":">sp|Q16595|FRDA_HUMAN Frataxin, mitochondrial OS=Homo sapiens GN=FXN PE=1 SV=2\r\nSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYTF\r\nEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGV\r\nSLHELLAAELTKALKTKLDLSSLAYSGKDA","organism":"Homo sapiens","uniprot_code":"Q16595","uniprot_range_first":81,"uniprot_range_last":210,"oligomerization":"dimer","molecular_type":"protein","uniprot_sequence":"MWTLGRRAVAGLLASPSPAQAQTLTRVPRPAELAPLCGRRGLRTDIDATCTPRRASSNQR\nGLNQIWNVKKQSVYLMNLRKSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYTF\nEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGV\nSLHELLAAELTKALKTKLDLSSLAYSGKDA","mw":14.268,"total_mw":28.536,"number_molecules":2,"complex_state":false,"deuteration":null,"molecule_source":"biological","molecule_description":null}],"buffer":{"name":"20 mM HEPES, 150 mM NaCl, 5 mM TCEP","concentration_unit":null,"comment":"HNT Buffer","additive":null,"concentration":null,"pka":null,"ph":7.5,"deuteration":null},"purity_method":null,"name":"Human mitochondrial cysteine desulfurase-ISCU-Frataxin (NFS1, ISD11 and Acp heterodimer complex)","ext_coefficient":null,"contrast":null,"specific_vol":null,"dry_vol":null,"absorbption":null,"deuteration":null,"mixture":null},"contributor":[{"affiliation":[{"short_name":null,"address":"Madison, WI, USA","full_name":"University of Wisconsin-Madison","webpage":"https://www.wisc.edu/"}],"contributor_name":"Kai","contributor_surname":"Cai","orcid":null}],"concentration_method":null,"concentration_unit":null,"date":"2017-04-18","storage_temperature":25.0,"cell_temperature":25.0,"exposure_time":3600.0,"number_of_frames":4,"wavelength":0.15418,"sample_detector_distance":1.0,"concentration_min":2.0,"concentration_max":10.0,"sample_volume":null,"flow_rate":null,"s_min":0.0,"s_max":2.56,"total_exposure_time":null,"seccolumn":null},"fits":[{"models":[{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDDD3_fit1_model1_img.png","software":"HADDOCK","pdb_link":[],"model_title":null,"type_of_model":"atomic","software_version":null,"model_data":"https://www.sasbdb.org/media/pdb_file/SASDDD3_fit1_model1.pdb","model_mw":166.9,"bead_radius":1.9,"log":null,"symmetry":null,"comment":null,"user":279}],"fit_unit":"1/A","fit_plot":"https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDDD3_fit1_fit_img.png","software":"CRYSOL","chi_square_value":4.937284,"p_value":4e-06,"fit_residual_plot":null,"fit_data":"https://www.sasbdb.org/media/fitting_files/SASDDD3_fit1.fit","fit_log":null,"software_version":null,"description":null}],"estimated_volume_method":null,"pddf_software":"ATSAS GNOM","pddf_software_version":"4.5a","i0_calibration_standard":null,"description":"The solution SAXS study of cysteine desulfurase complex containing ISCU and Frataxin","experiment_description":"SAXS data from solutions of Mitochondrial cysteine desulfurase-ISCU-Frataxin (NFS1, ISD11 and Acp heterodimer complex) in 20 mM HEPES, 150 mM NaCl, 5 mM TCEP, pH 7.5 were collected on a Bruker Nanostar instrument (Madison, WI, USA) using a MikroGap Vantec-2000 detector at a sample-detector distance of 1 m and at a wavelength of λ = 0.15418 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 2 and 10 mg/ml were measured at 25°C. Four successive 3600 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.","tags":[],"intensity_unit":"arbitrary","experimental_mw":175.0,"experimental_mw_error":null,"guinier_i0_mw":null,"guinier_i0_mw_error":null,"porod_mw":null,"porod_mw_error":null,"pddf_i0":1941.0,"pddf_i0_error":8.0,"guinier_i0":1933.33,"guinier_i0_error":9.7,"pddf_rg":4.21,"pddf_rg_error":0.05,"guinier_rg":4.14,"guinier_rg_error":0.12,"pddf_dmax":14.38,"pddf_dmax_error":0.05,"porod_volume":287.0,"porod_volume_error":null,"estimated_volume":null,"estimated_volume_error":null,"guinier_point_first":10,"guinier_point_last":23,"pddf_point_first":null,"pddf_point_last":null,"i0_calibration_standard_data":null,"intensities_log_log_plot":"SASDDD3_datloglog_img.png","symmetry":null,"last_modified":"2019-12-06T13:07:15.624532+01:00","bragg_peak":[]}