{"code":"SASDUX7","status":"Published","type_of_curve":"SEC-SAS","angular_unit":"1/A","project":{"title":"Aspergillus niger beta-glucosidase (bgl1)","publication":null,"status":"released","submitted_date":"2024-04-24","released_date":"2024-04-30"},"pddf_data":"https://www.sasbdb.org/media/p_of_R_files/SASDUX7.out","intensities_data":"https://www.sasbdb.org/media/intensities_files/SASDUX7.dat","intensities_log_plot":"https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDUX7_dat_img.png","intensities_kratky_plot":"https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDUX7_kratky_img.png","pddf_plot":"https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDUX7_pofr_img.png","intensities_guinier_plot":"https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDUX7_guinier_img.png","sascif_data":"https://www.sasbdb.org/media/sascif/sascif_files/SASDUX7.sascif","experiment":{"instrument":{"detector":{"type":"duel detector","name":"Pilatus3 X 1M , Pilatus3 X 900K","resolution":null},"name":"National Synchrotron Light Source II (NSLS-II)","city":"Upton, NY","country":"USA","beamline_name":"16-ID (LiX)","beam_geometry":null,"type_of_source":"X-ray synchrotron","point_source":true,"line_collimation":null,"sample_path_length":null,"line_collimation_slitlength":null,"line_collimation_integrationwidth":null,"xray_energy":null,"beam_profile_ah":null,"beam_profile_al":null},"sample":{"molecule":[{"long_name":"beta-glucosidase","short_name":"bgl1","sequence":"MRFTLIEAVALTAVSLASADELAYSPPYYPSPWANGQGDWAQAYQRAVDIVSQMTLDEKVNLTTGTGWELELCVGQTGGVPRLGVPGMCLQDSPLGVRDSDYNSAFPAGMNVAATWDKNLAYLRGKAMGQEFSDKGADIQLGPAAGPLGRSPDGGRNWEGFSPDPALSGVLFAETIKGIQDAGVVATAKHYIAYEQEHFRQAPEAQGFGFNISESGSANLDDKTMHELYLWPFADAIRAGAGAVMCSYNQINNSYGCQNSYTLNKLLKAELGFQGFVMSDWAAHHAGVSGALAGLDMSMPGDVDYDSGTSYWGTNLTISVLNGTVPQWRVDDMAVRIMAAYYKVGRDRLWTPPNFSSWTRDEYGYKYYYVSEGPYEKVNQYVNVQRNHSELIRRIGADSTVLLKNDGALPLTGKERLVALIGEDAGSNPYGANGCSDRGCDNGTLAMGWGSGTANFPYLVTPEQAISNEVLKHKNGVFTATDNWAIDQIEALAKTASVSLVFVNADSGEGYINVDGNLGDRRNLTLWRNGDNVIKAAASNCNNTIVVIHSVGPVLVNEWYDNPNVTAILWGGLPGQESGNSLADVLYGRVNPGAKSPFTWGKTREAYQDYLVTEPNNGNGAPQEDFVEGVFIDYRGFDKRNETPIYEFGYGLSYTTFNYSNLEVQVLSAPAYEPASGETEAAPTFGEVGNASDYLYPSGLQRITKFIYPWLNGTDLEASSGDASYGQDSSDYLPEGATDGSAQPILPAGGGPGGNPRLYDELIRVSVTIKNTGKVAGDEVPQLYVSLGGPNEPKIVLRQFERITLQPSEETKWSTTLTRRDLANWNVEKQDWEITSYPKMVFVGSSSRKLPLRASLPTVH","organism":"Aspergillus niger","uniprot_code":"Q9P8F4","uniprot_range_first":1,"uniprot_range_last":860,"oligomerization":"dimer","molecular_type":"protein","uniprot_sequence":"MRFTLIEAVALTAVSLASADELAYSPPYYPSPWANGQGDWAQAYQRAVDIVSQMTLDEKV\nNLTTGTGWELELCVGQTGGVPRLGVPGMCLQDSPLGVRDSDYNSAFPAGMNVAATWDKNL\nAYLRGKAMGQEFSDKGADIQLGPAAGPLGRSPDGGRNWEGFSPDPALSGVLFAETIKGIQ\nDAGVVATAKHYIAYEQEHFRQAPEAQGFGFNISESGSANLDDKTMHELYLWPFADAIRAG\nAGAVMCSYNQINNSYGCQNSYTLNKLLKAELGFQGFVMSDWAAHHAGVSGALAGLDMSMP\nGDVDYDSGTSYWGTNLTISVLNGTVPQWRVDDMAVRIMAAYYKVGRDRLWTPPNFSSWTR\nDEYGYKYYYVSEGPYEKVNQYVNVQRNHSELIRRIGADSTVLLKNDGALPLTGKERLVAL\nIGEDAGSNPYGANGCSDRGCDNGTLAMGWGSGTANFPYLVTPEQAISNEVLKHKNGVFTA\nTDNWAIDQIEALAKTASVSLVFVNADSGEGYINVDGNLGDRRNLTLWRNGDNVIKAAASN\nCNNTIVVIHSVGPVLVNEWYDNPNVTAILWGGLPGQESGNSLADVLYGRVNPGAKSPFTW\nGKTREAYQDYLVTEPNNGNGAPQEDFVEGVFIDYRGFDKRNETPIYEFGYGLSYTTFNYS\nNLEVQVLSAPAYEPASGETEAAPTFGEVGNASDYLYPSGLQRITKFIYPWLNGTDLEASS\nGDASYGQDSSDYLPEGATDGSAQPILPAGGGPGGNPRLYDELIRVSVTIKNTGKVAGDEV\nPQLYVSLGGPNEPKIVLRQFERITLQPSEETKWSTTLTRRDLANWNVEKQDWEITSYPKM\nVFVGSSSRKLPLRASLPTVH","mw":93.345,"total_mw":186.69,"number_molecules":2,"complex_state":false,"deuteration":null,"molecule_source":"biological","molecule_description":"Purified protein from native Aspergillus niger glucosidase crude product."}],"buffer":{"name":"50 mM sodium acetate","concentration_unit":null,"comment":null,"additive":null,"concentration":null,"pka":null,"ph":5.0,"deuteration":null},"purity_method":null,"name":"Aspergillus niger beta-glucosidase (bgl1), partially deglycosylated with Endoglycosidase H","ext_coefficient":null,"contrast":null,"specific_vol":null,"dry_vol":null,"absorbption":null,"deuteration":null,"mixture":null},"contributor":[{"affiliation":[{"short_name":null,"address":null,"full_name":"Brookhaven National Laboratory","webpage":null}],"contributor_name":"Estella","contributor_surname":"Yee","orcid":"https://orcid.org/0000-0001-7108-1387"}],"concentration_method":null,"concentration_unit":null,"date":"2024-02-15","storage_temperature":4.0,"cell_temperature":null,"exposure_time":2.0,"number_of_frames":10,"wavelength":0.08189,"sample_detector_distance":3.562,"concentration_min":null,"concentration_max":4.5,"sample_volume":99.0,"flow_rate":0.35,"s_min":0.06,"s_max":31.9,"total_exposure_time":null,"seccolumn":42},"fits":[{"models":[{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDUX7_fit1_model1_img.png","software":"GASBOR","pdb_link":[],"model_title":null,"type_of_model":"dummy","software_version":null,"model_data":"https://www.sasbdb.org/media/pdb_file/SASDUX7_fit1_model1.cif","model_mw":null,"bead_radius":null,"log":"https://www.sasbdb.org/media/log_files/Dammin-slow-9.log","symmetry":"P1","comment":null,"user":889}],"fit_unit":"1/A","fit_plot":"https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDUX7_fit1_fixed_fit_img.png","software":"GASBOR","chi_square_value":2.39,"p_value":0.0,"fit_residual_plot":"SASDUX7_fit1_fitresiduals_img.png","fit_data":"https://www.sasbdb.org/media/fitting_files/SASDUX7_fit1.fir","fit_log":"https://www.sasbdb.org/media/fitting_files/log_files/Dammin-slow-9.log","software_version":null,"description":""}],"estimated_volume_method":null,"pddf_software":"ATSAS GNOM","pddf_software_version":"5.0","i0_calibration_standard":null,"description":"For the experiment, SAXS and WAXS detectors were used simultaneously. The detector positions are Sample-to-detector distance (in meters): SAXS - 3.562, WAXS - 0.317","experiment_description":"Synchrotron SAXS data from solutions of Aspergillus niger beta-glucosidase (bgl1) in 50 mM sodium acetate, pH 5 were collected on the 16-ID (LiX) beamline at the National Synchrotron Light Source II (NSLS-II) storage ring (Upton, NY, USA) using a Pilatus3 X 1M, Pilatus3 X 900K detector at a sample-detector distance of 3.6 m and at a wavelength of λ = 0.08189 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 99.00 μl sample at 4.5 mg/ml was injected at a 0.35 ml/min flow rate onto a Biozen 3 µm dSEC-2, 200 Å column. 10 successive 2-second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.","tags":[],"intensity_unit":"arbitrary","experimental_mw":177.5,"experimental_mw_error":null,"guinier_i0_mw":null,"guinier_i0_mw_error":null,"porod_mw":186.0,"porod_mw_error":null,"pddf_i0":40.09,"pddf_i0_error":-2e-10,"guinier_i0":39.4712,"guinier_i0_error":null,"pddf_rg":4.37,"pddf_rg_error":null,"guinier_rg":4.24,"guinier_rg_error":0.193,"pddf_dmax":14.0,"pddf_dmax_error":null,"porod_volume":253.0,"porod_volume_error":null,"estimated_volume":null,"estimated_volume_error":null,"guinier_point_first":1,"guinier_point_last":24,"pddf_point_first":null,"pddf_point_last":null,"i0_calibration_standard_data":null,"intensities_log_log_plot":"SASDUX7_datloglog_img.png","symmetry":null,"last_modified":"2024-06-14T16:27:53.242047+02:00","bragg_peak":[]}