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The protein fragment encompasses the Ig-like C2-type 3 and Ig-like C2-type 4 domains (Ig34WT)."}],"buffer":{"name":"20 mM HEPES pH 7.4, 1 mM DTT, 100 mM NaCl","concentration_unit":null,"comment":"HEPES storage buffer","additive":null,"concentration":null,"pka":null,"ph":null,"deuteration":null},"purity_method":null,"name":"The Ig-like C2-type 3 and Ig-like C2-type 4 domains (Ig34WT) of Palladin","ext_coefficient":null,"contrast":null,"specific_vol":null,"dry_vol":null,"absorbption":null,"deuteration":null,"mixture":null},"contributor":[{"affiliation":[{"short_name":null,"address":null,"full_name":"Wichita State University","webpage":null}],"contributor_name":"Rachel","contributor_surname":"Sargent","orcid":""}],"concentration_method":null,"concentration_unit":null,"date":"2023-08-29","storage_temperature":4.0,"cell_temperature":20.0,"exposure_time":1.0,"number_of_frames":12,"wavelength":0.113,"sample_detector_distance":1.246,"concentration_min":0.5,"concentration_max":7.4,"sample_volume":null,"flow_rate":null,"s_min":0.104,"s_max":7.383,"total_exposure_time":null,"seccolumn":null},"fits":[{"models":[{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDVF6_fit1_model1_img.png","software":"EOM/RANCH","pdb_link":[],"model_title":null,"type_of_model":"mix","software_version":"2.8.2","model_data":"https://www.sasbdb.org/media/pdb_file/SASDVF6_fit1_model1.pdb","model_mw":25.71,"bead_radius":1.9,"log":"https://www.sasbdb.org/media/log_files/logFile_001_1_8glX4X4.log","symmetry":null,"comment":null,"user":1106},{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDVF6_fit1_model2_img.png","software":"EOM/RANCH","pdb_link":[],"model_title":null,"type_of_model":"mix","software_version":null,"model_data":"https://www.sasbdb.org/media/pdb_file/SASDVF6_fit1_model2.pdb","model_mw":25.71,"bead_radius":1.9,"log":null,"symmetry":null,"comment":null,"user":1106},{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDVF6_fit1_model3_img.png","software":"EOM/RANCH","pdb_link":[],"model_title":null,"type_of_model":"mix","software_version":null,"model_data":"https://www.sasbdb.org/media/pdb_file/SASDVF6_fit1_model3.pdb","model_mw":25.71,"bead_radius":1.9,"log":null,"symmetry":null,"comment":null,"user":1106},{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDVF6_fit1_model4_img.png","software":"EOM/RANCH","pdb_link":[],"model_title":null,"type_of_model":"mix","software_version":null,"model_data":"https://www.sasbdb.org/media/pdb_file/SASDVF6_fit1_model4.pdb","model_mw":25.71,"bead_radius":1.9,"log":null,"symmetry":null,"comment":null,"user":1106},{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDVF6_fit1_model5_img.png","software":"EOM/RANCH","pdb_link":[],"model_title":null,"type_of_model":"mix","software_version":null,"model_data":"https://www.sasbdb.org/media/pdb_file/SASDVF6_fit1_model5.pdb","model_mw":25.71,"bead_radius":1.9,"log":null,"symmetry":null,"comment":null,"user":1106},{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDVF6_fit1_model6_img.png","software":"EOM/RANCH","pdb_link":[],"model_title":null,"type_of_model":"mix","software_version":null,"model_data":"https://www.sasbdb.org/media/pdb_file/SASDVF6_fit1_model6.pdb","model_mw":25.71,"bead_radius":1.9,"log":null,"symmetry":null,"comment":null,"user":1106},{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDVF6_fit1_model7_img.png","software":"EOM/RANCH","pdb_link":[],"model_title":null,"type_of_model":"mix","software_version":null,"model_data":"https://www.sasbdb.org/media/pdb_file/SASDVF6_fit1_model7.pdb","model_mw":25.71,"bead_radius":1.9,"log":null,"symmetry":null,"comment":null,"user":1106},{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDVF6_fit1_model8_img.png","software":"EOM/RANCH","pdb_link":[],"model_title":null,"type_of_model":"mix","software_version":null,"model_data":"https://www.sasbdb.org/media/pdb_file/SASDVF6_fit1_model8.pdb","model_mw":25.71,"bead_radius":1.9,"log":null,"symmetry":null,"comment":null,"user":1106}],"fit_unit":"1/A","fit_plot":"https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVF6_fit1_fixed_fit_img.png","software":"EOM/GAJOE","chi_square_value":1.077,"p_value":0.862,"fit_residual_plot":"SASDVF6_fit1_fitresiduals_img.png","fit_data":"https://www.sasbdb.org/media/fitting_files/SASDVF6_fit1.fit","fit_log":"https://www.sasbdb.org/media/fitting_files/log_files/logFile_001_1_z4e0OZh.log","software_version":"2.8.2","description":""}],"estimated_volume_method":null,"pddf_software":"ATSAS GNOM","pddf_software_version":"5.0","i0_calibration_standard":null,"description":"NOTE: Amino acid sequence discrepancies are noted between on aligning the model and the submitted amino acid sequence.","experiment_description":"Synchrotron SAXS data from solutions of the Ig-like C2-type 3 and Ig-like C2-type 4 domains (Ig34WT) of palladin in 20 mM HEPES pH 7.4, 1 mM DTT, 100 mM NaCl were collected on the BL4-2 beam line at the Stanford Synchrotron Radiation Lightsource (SSR; Menlo Park, CA, USA) using a Rayonix MX225-HE detector at a sample-detector distance of 1.2 m and at a wavelength of λ = 0.113 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 0.5 and 7.4 mg/ml were measured at 20°C. 12 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve.","tags":[],"intensity_unit":"arbitrary","experimental_mw":25.4,"experimental_mw_error":null,"guinier_i0_mw":null,"guinier_i0_mw_error":null,"porod_mw":18.0,"porod_mw_error":null,"pddf_i0":0.007259,"pddf_i0_error":null,"guinier_i0":0.00710945,"guinier_i0_error":null,"pddf_rg":3.04,"pddf_rg_error":null,"guinier_rg":2.811,"guinier_rg_error":0.276,"pddf_dmax":12.26,"pddf_dmax_error":null,"porod_volume":28.6,"porod_volume_error":null,"estimated_volume":null,"estimated_volume_error":null,"guinier_point_first":8,"guinier_point_last":47,"pddf_point_first":null,"pddf_point_last":null,"i0_calibration_standard_data":null,"intensities_log_log_plot":"SASDVF6_datloglog_img.png","symmetry":null,"last_modified":"2025-04-28T15:41:14.132211+02:00","bragg_peak":[]}