{"code":"SASDVQ6","status":"Published","type_of_curve":"SEC-SAS","angular_unit":"1/A","project":{"title":"Selective cargo and membrane recognition by SNX17 regulates its interaction with Retriever","publication":{"title":"Selective cargo and membrane recognition by SNX17 regulates its interaction with Retriever","author_list":"Martín-González A, Méndez-Guzmán I, Zabala-Zearreta M, Quintanilla A, García-López A, Martínez-Lombardía E, Albesa-Jové D, Acosta J, Lucas M","journal":"EMBO Reports","doi":"10.1038/s44319-024-00340-1","pmid":null,"published_date":"2024 Dec 09"},"status":"released","submitted_date":"2024-08-27","released_date":"2024-11-21"},"pddf_data":"https://www.sasbdb.org/media/p_of_R_files/SASDVQ6.out","intensities_data":"https://www.sasbdb.org/media/intensities_files/SASDVQ6.dat","intensities_log_plot":"https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVQ6_dat_img.png","intensities_kratky_plot":"https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVQ6_kratky_img.png","pddf_plot":"https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVQ6_pofr_img.png","intensities_guinier_plot":"https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVQ6_guinier_img.png","sascif_data":"https://www.sasbdb.org/media/sascif/sascif_files/SASDVQ6.sascif","experiment":{"instrument":{"detector":{"type":null,"name":"Eiger 4M","resolution":75.0},"name":"Diamond Light Source","city":"Didcot","country":"UK","beamline_name":"B21","beam_geometry":null,"type_of_source":"X-ray 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Cantabria","webpage":null}],"contributor_name":"María","contributor_surname":"Lucas","orcid":"http://orcid.org/0000-0002-7854-4249"}],"concentration_method":null,"concentration_unit":null,"date":"2022-04-28","storage_temperature":-80.0,"cell_temperature":15.0,"exposure_time":3.0,"number_of_frames":600,"wavelength":0.0954,"sample_detector_distance":3.688,"concentration_min":null,"concentration_max":5.0,"sample_volume":45.0,"flow_rate":0.16,"s_min":0.045,"s_max":3.4,"total_exposure_time":null,"seccolumn":19},"fits":[{"models":[{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDVQ6_fit1_model1_img.png","software":"AlphaFold","pdb_link":[],"model_title":null,"type_of_model":"atomic","software_version":"Multimer","model_data":"https://www.sasbdb.org/media/pdb_file/SASDVQ6_fit1_model1.pdb","model_mw":163.0,"bead_radius":null,"log":null,"symmetry":null,"comment":null,"user":1116}],"fit_unit":"1/A","fit_plot":"https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVQ6_fit1_fixed_fit_img.png","software":"CRYSOL","chi_square_value":1.502,"p_value":0.0,"fit_residual_plot":null,"fit_data":"https://www.sasbdb.org/media/fitting_files/SASDVQ6_fit1.fit","fit_log":"https://www.sasbdb.org/media/fitting_files/log_files/Retriever_ma-3cag5.log","software_version":"2.8.3","description":""},{"models":[{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDVQ6_fit2_model1_img.png","software":"AlphaFold","pdb_link":[],"model_title":null,"type_of_model":"atomic","software_version":"Multimer","model_data":"https://www.sasbdb.org/media/pdb_file/SASDVQ6_fit2_model1.pdb","model_mw":163.0,"bead_radius":null,"log":null,"symmetry":null,"comment":"Cryo-EM structure (pdbID:8SYN) was used as template in AlphaFold Multimer to model the missing loops","user":1116}],"fit_unit":"1/A","fit_plot":"https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVQ6_fit2_fixed_fit_img.png","software":"CRYSOL","chi_square_value":1.515,"p_value":0.0,"fit_residual_plot":null,"fit_data":"https://www.sasbdb.org/media/fitting_files/SASDVQ6_fit2.fit","fit_log":"https://www.sasbdb.org/media/fitting_files/log_files/Retriever_8SYN.log","software_version":"2.8.3","description":""},{"models":[{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDVQ6_fit3_model1_img.png","software":"GASBOR","pdb_link":[],"model_title":null,"type_of_model":"dummy","software_version":"2.3i","model_data":"https://www.sasbdb.org/media/pdb_file/SASDVQ6_fit3_model1.pdb","model_mw":null,"bead_radius":null,"log":null,"symmetry":null,"comment":null,"user":1116}],"fit_unit":"1/A","fit_plot":"https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVQ6_fit3_fixed_fit_img.png","software":"GASBOR","chi_square_value":1.23,"p_value":0.0,"fit_residual_plot":"SASDVQ6_fit3_fitresiduals_img.png","fit_data":"https://www.sasbdb.org/media/fitting_files/SASDVQ6_fit3.fir","fit_log":"https://www.sasbdb.org/media/fitting_files/log_files/Retriever_GASBOR.log","software_version":"2.3i","description":""}],"estimated_volume_method":null,"pddf_software":"ATSAS 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In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 45.00 μl sample at 5 mg/ml was injected at a 0.16 ml/min flow rate onto a Shodex KW403-4F column at 15°C. 600 successive 3 second frames were collected. 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