{"code":"SASDYX6","status":"Published","type_of_curve":"SEC-SAS","angular_unit":"1/A","project":{"title":"Biochemical and structural characterization of a tail-spike protein with depolymerase activity identified in a marine podovirus.","publication":{"title":"Biochemical and structural characterization of a tail-spike protein with depolymerase activity identified in a marine podovirus.","author_list":"Sirigu S, Roret T, Mocaër PY, Larocque R, Jouanneau D, Legrand P, Baudoux AC, Czjzek M","journal":"Acta Crystallogr D Struct Biol","doi":"10.1107/S2059798326005425","pmid":"42308020","published_date":"2026 Jul 1"},"status":"released","submitted_date":"2026-02-14","released_date":"2026-06-20"},"pddf_data":"https://www.sasbdb.org/media/p_of_R_files/SASDYX6.out","intensities_data":"https://www.sasbdb.org/media/intensities_files/SASDYX6.dat","intensities_log_plot":"https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYX6_dat_img.png","intensities_kratky_plot":"https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYX6_kratky_img.png","pddf_plot":"https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDYX6_pofr_img.png","intensities_guinier_plot":"https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYX6_guinier_img.png","sascif_data":"https://www.sasbdb.org/media/sascif/sascif_files/SASDYX6.sascif","experiment":{"instrument":{"detector":{"type":"CCD","name":"AVIEX PCCD170170","resolution":null},"name":"SOLEIL","city":"Saint-Aubin","country":"France","beamline_name":"SWING","beam_geometry":"","type_of_source":"X-ray synchrotron","point_source":null,"line_collimation":null,"sample_path_length":null,"line_collimation_slitlength":null,"line_collimation_integrationwidth":null,"xray_energy":null,"beam_profile_ah":null,"beam_profile_al":null},"sample":{"molecule":[{"long_name":"tailspike protein depolymerase Dpo31","short_name":"Dpo31","sequence":"ATTVFPYAFRIFESSDLEVYLTDEDGDQ\r\nALLIEGTDYTVSGAGDEEGGEITFPVSGDPLDDGETLTILRVIDITQETDLKNQGAYY\r\nPEVVEDEFDRSRMIDQQQQEQLDRALIKTETGDRWEGQGVPAKNFAMSDPVEDTDLPT\r\nVRWTKDYVTQMAEGITGDIGAYTVVAPTSGDEKRLDEWMDDIQRPDDSLVVADGGTEA\r\nRSLSERFADSASYQDYGIAGDGTTNDTAAFAALESDRSSDAIELHGNTYLVDEIPNGN\r\nAYRDAVWSLDGEDLSISEYGGLVTGTPTTGAFEPAYTGGVNNTPTTSGRTNKHTRAIL\r\nASQNCRADFARSACVASIYSWAYGNVSGNFASRQSIAGAPQTVNIGSEEGQALGFQSG\r\nNYTTQFCRAEGSTTFNIGSDDCAASGAHSGTISSLESYAGRGHDFRGTPVFDDGVLVD\r\nITIDDAGAGYVPGSDVMYLQNRQFGNTTDAVITYTVDGTGGVSAITITDGGSGYSGIV\r\nAARIDTFGDYSLVMASARSKIEDQFCAAIASDNARVRGRESAVIASDGGVVNEDNSVV\r\nIGSVDSTSNGARSGIYTGSGCETTGAGAVVIGGVNAKASNDGAIVMGRGVDSEFARSL\r\nVFGDGGSGAAASTAGRKFQVTAAGNVTAAGTITGSTTYA","organism":"Cobetia phage Carin1","uniprot_code":null,"uniprot_range_first":17,"uniprot_range_last":665,"oligomerization":"trimer","molecular_type":"protein","uniprot_sequence":"","mw":67.5,"total_mw":202.5,"number_molecules":1,"complex_state":false,"deuteration":null,"molecule_source":"biological","molecule_description":"trimeric tailspike protein that contains a depolymerase from the marine Cobetia phage Carin1, mature form, Dpo31"}],"buffer":{"name":"Tris-HCl 50 mM pH 8, NaCl 100 mM","concentration_unit":null,"comment":null,"additive":null,"concentration":null,"pka":null,"ph":8.0,"deuteration":null},"purity_method":null,"name":"trimeric depolymerase Dpo31 lacking domain D1, mature form without D4","ext_coefficient":null,"contrast":null,"specific_vol":null,"dry_vol":null,"absorbption":null,"deuteration":null,"mixture":null},"contributor":[{"affiliation":[{"short_name":null,"address":null,"full_name":"LBI2M, Sorbonne Université CNRS, UMR8227","webpage":null}],"contributor_name":"Mirjam","contributor_surname":"Czjzek","orcid":"https://orcid.org/0000-0002-7483-2841"}],"concentration_method":null,"concentration_unit":null,"date":"2022-04-14","storage_temperature":4.0,"cell_temperature":15.0,"exposure_time":0.5,"number_of_frames":250,"wavelength":0.1033,"sample_detector_distance":1.807,"concentration_min":null,"concentration_max":26.9,"sample_volume":40.0,"flow_rate":0.2,"s_min":0.037,"s_max":5.148,"total_exposure_time":null,"seccolumn":23},"fits":[{"models":[{"model_plot":"https://www.sasbdb.org/media/pdb_file/images/SASDYX6_fit1_model1_img.png","software":"GASBOR","pdb_link":[],"model_title":null,"type_of_model":"dummy","software_version":null,"model_data":"https://www.sasbdb.org/media/pdb_file/SASDYX6_fit1_model1.pdb","model_mw":null,"bead_radius":null,"log":"https://www.sasbdb.org/media/log_files/DD1.log","symmetry":null,"comment":null,"user":1029}],"fit_unit":"1/A","fit_plot":"https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDYX6_fit1_fixed_fit_img.png","software":"GASBOR","chi_square_value":301.3696,"p_value":0.0,"fit_residual_plot":"SASDYX6_fit1_fitresiduals_img.png","fit_data":"https://www.sasbdb.org/media/fitting_files/SASDYX6_fit1.fir","fit_log":"https://www.sasbdb.org/media/fitting_files/log_files/DD1.log","software_version":null,"description":""}],"estimated_volume_method":null,"pddf_software":"ATSAS GNOM","pddf_software_version":"4.5a","i0_calibration_standard":null,"description":null,"experiment_description":null,"tags":[],"intensity_unit":"arbitrary","experimental_mw":174.6,"experimental_mw_error":null,"guinier_i0_mw":157.7,"guinier_i0_mw_error":null,"porod_mw":171.0,"porod_mw_error":null,"pddf_i0":0.4589,"pddf_i0_error":null,"guinier_i0":0.486523,"guinier_i0_error":null,"pddf_rg":5.38,"pddf_rg_error":0.05,"guinier_rg":5.598,"guinier_rg_error":0.069,"pddf_dmax":19.0,"pddf_dmax_error":0.3,"porod_volume":207.27,"porod_volume_error":null,"estimated_volume":null,"estimated_volume_error":null,"guinier_point_first":20,"guinier_point_last":36,"pddf_point_first":null,"pddf_point_last":null,"i0_calibration_standard_data":null,"intensities_log_log_plot":"SASDYX6_datloglog_img.png","symmetry":null,"last_modified":"2026-06-20T16:07:22.371129+02:00","bragg_peak":[]}