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8 hits found for octo-repeat PrP mRNA

SASDDG5 – ...mRNA (PrP mRNA wild type)

octo-repeat PrP mRNA experimental SAS data
DAMFILT model
Sample: octo-repeat PrP mRNA dimer, ...PrP ORF RNA
Buffer: 10 mM Tris buffer, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Nov 4
...mRNA forms stable A-helical hairpin structure rather than G-quadruplexes. Sci Rep 9(1):2465 (2019)
Czech A, Konarev PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
RgGuinier 7.4 nm
Dmax 25.0 nm
VolumePorod 165 nm3

SASDDH5 – ...mRNA (PrP mRNA wild type) with KCl

octo-repeat PrP mRNA experimental SAS data
DAMFILT model
Sample: octo-repeat PrP mRNA dimer, ...PrP ORF RNA
Buffer: 10 mM Tris buffer with 100 mM KCl, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Jun 6
...mRNA forms stable A-helical hairpin structure rather than G-quadruplexes. Sci Rep 9(1):2465 (2019)
Czech A, Konarev PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
RgGuinier 8.8 nm
Dmax 31.0 nm
VolumePorod 240 nm3

SASDDJ5 – ...mRNA (PrP mRNA wild type) with LiCl

octo-repeat PrP mRNA experimental SAS data
DAMFILT model
Sample: octo-repeat PrP mRNA dimer, ...PrP ORF RNA
Buffer: 10 mM Tris buffer with 100 mM LiCl, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Jun 6
...mRNA forms stable A-helical hairpin structure rather than G-quadruplexes. Sci Rep 9(1):2465 (2019)
Czech A, Konarev PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
RgGuinier 9.0 nm
Dmax 31.0 nm
VolumePorod 225 nm3

SASDDK5 – ...mRNA (PrP mRNA wild type) with KCl and pyridostatin (PDS)

octo-repeat PrP mRNA experimental SAS data
DAMFILT model
Sample: octo-repeat PrP mRNA dimer, ...PrP ORF RNA
Buffer: 10 mM Tris buffer with 100 mM KCl and 1 mM PDS, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Jun 6
...mRNA forms stable A-helical hairpin structure rather than G-quadruplexes. Sci Rep 9(1):2465 (2019)
Czech A, Konarev PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
RgGuinier 9.1 nm
Dmax 31.0 nm
VolumePorod 220 nm3

SASDDL5 – ...mRNA (octo-repeat PrP mRNA)

octo-repeat PrP mRNA mutant experimental SAS data
DAMFILT model
Sample: octo-repeat PrP mRNA mutant dimer, ...PrP ORF RNA
Buffer: 10 mM Tris buffer, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Jun 6
...mRNA forms stable A-helical hairpin structure rather than G-quadruplexes. Sci Rep 9(1):2465 (2019)
Czech A, Konarev PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
RgGuinier 7.0 nm
Dmax 24.0 nm
VolumePorod 150 nm3

SASDDM5 – ...mRNA (octo-repeat PrP mRNA) with KCl

octo-repeat PrP mRNA mutant experimental SAS data
DAMFILT model
Sample: octo-repeat PrP mRNA mutant dimer, ...PrP ORF RNA
Buffer: 10 mM Tris buffer with 100 mM KCl, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Jun 6
...mRNA forms stable A-helical hairpin structure rather than G-quadruplexes. Sci Rep 9(1):2465 (2019)
Czech A, Konarev PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
RgGuinier 9.0 nm
Dmax 33.0 nm
VolumePorod 210 nm3

SASDDN5 – ...mRNA (octo-repear PrP mRNA) with LiCl

octo-repeat PrP mRNA mutant experimental SAS data
DAMFILT model
Sample: octo-repeat PrP mRNA mutant dimer, ...PrP ORF RNA
Buffer: 10 mM Tris buffer with 100 mM LiCl, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Jun 6
...mRNA forms stable A-helical hairpin structure rather than G-quadruplexes. Sci Rep 9(1):2465 (2019)
Czech A, Konarev PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
RgGuinier 8.9 nm
Dmax 33.0 nm
VolumePorod 223 nm3

SASDDP5 – ...mRNA (octo-repear PrP mRNA) with KCl and pyridostatin (PDS)

octo-repeat PrP mRNA mutant experimental SAS data
DAMFILT model
Sample: octo-repeat PrP mRNA mutant dimer, ...PrP ORF RNA
Buffer: 10 mM Tris buffer with 100 mM KCl and 1 mM PDS, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Jun 6
...mRNA forms stable A-helical hairpin structure rather than G-quadruplexes. Sci Rep 9(1):2465 (2019)
Czech A, Konarev PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
RgGuinier 9.2 nm
Dmax 33.0 nm
VolumePorod 260 nm3