Histone chaperone exploits intrinsic disorder to switch acetylation specificity (Asf1-H3:H4-Rtt109-Vps75 protein complex, data for docking block selections)

Danilenko N, Lercher L, Kirkpatrick J, Gabel F, Codutti L, Carlomagno T, Nat Commun 10(1):3435 (2019) URL

SASDFK7 – Complex with 1H histone chaperone Asf1, histones H3 (35-135aa) and H4; 70%-2H histone acetyltransferase Rtt109 and histone chaperone Vps75 (1-225aa) acquired in 100% v/v D2O

Vacuolar protein sorting-associated protein 75 (1-225 aa)
Histone acetyltransferase RTT109
Histone chaperone ASF1
Histone H3.2 (35-135 aa)
Histone H4
MWexperimental 145 kDa
MWexpected 145 kDa
log I(s) 2.00×10-2 2.00×10-3 2.00×10-4 2.00×10-5
Vacuolar protein sorting-associated protein 75 (1-225 aa) Histone acetyltransferase RTT109 Histone chaperone ASF1 Histone H3.2 (35-135 aa) Histone H4 small angle scattering data  s, nm-1
ln I(s)
Vacuolar protein sorting-associated protein 75 (1-225 aa) Histone acetyltransferase RTT109 Histone chaperone ASF1 Histone H3.2 (35-135 aa) Histone H4 Guinier plot ln 2×10-2 Rg: 1.9 nm 0 (1.9 nm)-2 s2
(sRg)2I(s)/I(0)
Vacuolar protein sorting-associated protein 75 (1-225 aa) Histone acetyltransferase RTT109 Histone chaperone ASF1 Histone H3.2 (35-135 aa) Histone H4 Kratky plot 1.104 0 3 sRg
p(r)
Vacuolar protein sorting-associated protein 75 (1-225 aa) Histone acetyltransferase RTT109 Histone chaperone ASF1 Histone H3.2 (35-135 aa) Histone H4 pair distance distribution function Rg: 2.1 nm 0 Dmax: 5.5 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Vacuolar protein sorting-associated protein 75 (1-225 aa) Histone acetyltransferase RTT109 Histone chaperone ASF1 Histone H3.2 (35-135 aa) Histone H4 HADDOCK model

SANS data from solutions the Asf1-H3:H4-Rtt109-Vps75 protein complex (1H Asf1-H3(35-135):H4, bound to 70% 2H-labelled Rtt109-Vps75(1-225)) in 50 mM citrate, 150 mM NaCl, 5 mM BME, 100% D2O, pD 6.5 were collected on the D22 instrument at the ILL (Grenoble, France) using a 3He multidetector 128 linear sensitive Reuter-Stokes detector detector at a sample-detector/Collimation distance of 4 m/4 m and at a wavelength of λ = 0.6 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 2.55 mg/ml was measured at 25°C for 1 h.

Storage temperature = UNKNOWN

Vacuolar protein sorting-associated protein 75 (1-225 aa) (Vps75 1-225)
Mol. type   Protein
Organism   Saccharomyces cerevisiae
Olig. state   Dimer
Mon. MW   26.6 kDa
 
UniProt   P53853 (1-225)
Sequence   FASTA
 
Histone acetyltransferase RTT109 (Rtt109)
Mol. type   Protein
Organism   Saccharomyces cerevisiae
Olig. state   Monomer
Mon. MW   50.1 kDa
 
UniProt   Q07794 (1-436)
Sequence   FASTA
 
Histone chaperone ASF1 (Asf1)
Mol. type   Protein
Olig. state   Monomer
Mon. MW   19.1 kDa
 
UniProt   P32447 (1-169)
Sequence   FASTA
 
Histone H3.2 (35-135 aa) (H3 (35-135))
Mol. type   Protein
Organism   Xenopus laevis
Olig. state   Monomer
Mon. MW   11.7 kDa
 
UniProt   P84233 (35-135)
Sequence   FASTA
 
Histone H4 (H4)
Mol. type   Protein
Organism   Xenopus laevis
Olig. state   Monomer
Mon. MW   11.4 kDa
 
UniProt   P62799 (1-103)
Sequence   FASTA