Allosteric autoregulation of DNA binding via a DNA-mimicking protein domain: a biophysical study of ZNF410-DNA interaction using small angle X-ray scattering.

Kaur G, Ren R, Hammel M, Horton JR, Yang J, Cao Y, He C, Lan F, Lan X, Blobel GA, Blumenthal RM, Zhang X, Cheng X, Nucleic Acids Res (2023) Europe PMC

SASDQG5 – DNA (Zinc finger protein 410 recognition sequence)

DNA (Zinc finger protein 410 recognition sequence)
MWexperimental 11 kDa
MWexpected 11 kDa
VPorod 16 nm3
log I(s) 2.58×101 2.58×100 2.58×10-1 2.58×10-2
DNA (Zinc finger protein 410 recognition sequence) small angle scattering data  s, nm-1
ln I(s)
DNA (Zinc finger protein 410 recognition sequence) Guinier plot ln 2.59×101 Rg: 1.8 nm 0 (1.8 nm)-2 s2
(sRg)2I(s)/I(0)
DNA (Zinc finger protein 410 recognition sequence) Kratky plot 1.104 0 3 sRg
p(r)
DNA (Zinc finger protein 410 recognition sequence) pair distance distribution function Rg: 1.8 nm 0 Dmax: 5.8 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of DNA (zinc finger protein 410 recognition sequence) in 20 mM Tris, 250 mM NaCl, 0.1% v/v β-mercaptoethanol, pH 7.5 were collected on the 12.3.1 (SIBYLS) beam line at the Advanced Light Source (ALS; Berkeley, CA, USA) using a Pilatus3 X 2M detector at a sample-detector distance of 2.1 m and at a wavelength of λ = 0.1127 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 55.00 μl sample at 5 mg/ml was injected at a 0.50 ml/min flow rate onto a Shodex KW-800 series column at 20°C. 30 successive 3 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

DNA (Zinc finger protein 410 recognition sequence)
Mol. type   DNA
Olig. state   Monomer
Mon. MW   11.1 kDa
Sequence   FASTA