Fine-tuning of intrinsic N-Oct-3 POU domain allostery by regulatory DNA targets

Alazard R, Mourey L, Ebel C, Konarev P, Petoukhov M, Svergun D, Erard M, Nucleic Acids Research 35(13):4420-4432 (2007) DOI

SASDL37 – N-Oct-3 POU transcription factor domain in complex with human DR-alpha DNA

POU domain, class 3, transcription factor 2
Human DR-alpha DNA
MWexperimental 34 kDa
MWexpected 34 kDa
VPorod 44 nm3
log I(s) 1.36×102 1.36×101 1.36×100 1.36×10-1
POU domain, class 3, transcription factor 2 Human DR-alpha DNA small angle scattering data  s, nm-1
ln I(s)
POU domain, class 3, transcription factor 2 Human DR-alpha DNA Guinier plot ln 1.37×102 Rg: 2.9 nm 0 (2.9 nm)-2 s2
(sRg)2I(s)/I(0)
POU domain, class 3, transcription factor 2 Human DR-alpha DNA Kratky plot 1.104 0 3 sRg
p(r)
POU domain, class 3, transcription factor 2 Human DR-alpha DNA pair distance distribution function Rg: 2.8 nm 0 Dmax: 11 nm

Data validation


Fits and models


log I(s)
 s, nm-1
POU domain, class 3, transcription factor 2 Human DR-alpha DNA CUSTOM IN-HOUSE model

Synchrotron SAXS data from solutions of N-Oct-3 POU transcription factor domain in complex with human DR-alpha DNA in 50 mM Tris, 0.4 M NaCl, 2% glycerol, 2 mM DTT, pH 7.5 were collected on the EMBL X33 beam line at the DORIS III, DESY storage ring (Hamburg, Germany) using a 1D Gas detector detector at a sample-detector distance of 2.3 m and at a wavelength of λ = 0.15 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 3.5 and 3.9 mg/ml were measured at 12°C. 15 successive 60 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve.

Storage temperature = UNKNOWN

Tags: X33
POU domain, class 3, transcription factor 2 (N-Oct3 DBD)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   18.8 kDa
 
UniProt   P20265 (254-420)
Sequence   FASTA
 
Human DR-alpha DNA (DRA)
Mol. type   DNA
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   14.8 kDa
Sequence   FASTA