Substrate Locking Promotes Dimer-Dimer Docking of an Enzyme Antibiotic Target.

Atkinson SC, Dogovski C, Wood K, Griffin MDW, Gorman MA, Hor L, Reboul CF, Buckle AM, Wuttke J, Parker MW, Dobson RCJ, Perugini MA, Structure 26(7):948-959.e5 (2018) Europe PMC

SASDDV5 – 4-hydroxy-tetrahydrodipicolinate synthase (DHDPS-apo) from C. botulinum

4-hydroxy-tetrahydrodipicolinate synthase from Clostridium botulinum
MWexperimental 125 kDa
MWexpected 126 kDa
VPorod 159 nm3
log I(s) 6.90×10-2 6.90×10-3 6.90×10-4 6.90×10-5
4-hydroxy-tetrahydrodipicolinate synthase from Clostridium botulinum small angle scattering data  s, nm-1
ln I(s)
4-hydroxy-tetrahydrodipicolinate synthase from Clostridium botulinum Guinier plot ln 6.90×10-2 Rg: 3.2 nm 0 (3.2 nm)-2 s2
(sRg)2I(s)/I(0)
4-hydroxy-tetrahydrodipicolinate synthase from Clostridium botulinum Kratky plot 1.104 0 3 sRg
p(r)
4-hydroxy-tetrahydrodipicolinate synthase from Clostridium botulinum pair distance distribution function Rg: 3.2 nm 0 Dmax: 9 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of 4-hydroxy-tetrahydrodipicolinate synthase (DHDPS-apo) from C. botulinum in 20mM Tris, 150mM NaCl, pH 8, were collected on the SAXS/WAXS beam line at the Australian Synchrotron (Melbourne, Australia) using a Pilatus 1M detector at a sample-detector distance of 0.9 m and at a wavelength of λ = 0.10332 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). The protein sample analyzed was subjected to in-line size exclusion chromatography on a Superdex 200 5/150 GL gel-filtration column (GE Healthcare) with a bed volume of 3 ml equilibrated with buffer at a flow rate of 0.2 ml.min-1. 50 µL Cbot-DHDPS at 300 µM was injected and the fractionated sample flowed through a 1.5 mm quartz capillary where it was exposed to the X-ray beam at 25°C. Seven successive 5 second frames were collected through the SEC-elution profile. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of an appropriate SEC solvent-blank was subtracted.

SEC column = UNKNOWN. Sample injection volume = UNKNOWN. Flow rate = UNKNOWN

4-hydroxy-tetrahydrodipicolinate synthase from Clostridium botulinum (Cbot-DHDPS)
Mol. type   Protein
Organism   Clostridium botulinum
Olig. state   Tetramer
Mon. MW   31.5 kDa
 
UniProt   A5I6N2 (2-292)
Sequence   FASTA