Curated repository for small angle scattering data and models


SASBDB currently contains:


420

experimental data sets

719

models
193 experimental data sets on hold
263 models on hold

Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm.
SASBDB is a fully searchable curated repository of freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data.

Recent depositions:

SASDCQ5 – SAXS on intact Doryteuthis squid lens 100% layer

S-crystallin, Q25367_DOROP experimental SAS data
DAMMIF model
Sample: S-crystallin, Q25367_DOROP dimer, Doryteuthis pealeii protein
Buffer: Tissue fluid, pH: 7
Experiment: SAXS data collected at X9A, National Synchrotron Light Source (NSLS) 2014-Jul-17
Eye patches: Protein assembly of index-gradient squid lenses. Science 2017 Aug 11;357(6351):564-569
Cai J, Townsend JP, Dodson TC, Heiney PA, Sweeney AM

SASDCD3 – Nucleolysin TIA-1 isoform p40 (LPQTG containing construct for sortase mediated protein ligation)
Nucleolysin TIA-1 isoform p40 experimental SAS data
Nucleolysin TIA-1 isoform p40 Kratky plot
Segmental, Domain-Selective Perdeuteration and Small-Angle Neutron Scattering for Structural Analysis of Multi-Domain Proteins.
SASDBD9 – ABC transporter periplasmic substrate-binding protein TupA measured in the absence of metal ligand (tungstate or molybdate)
ABC transporter periplasmic substrate-binding protein experimental SAS data
SREFLEX model
Highly selective tungstate transporter protein TupA from Desulfovibrio alaskensis G20.
SASDCP3 – Proline utilization A from Bdellovibrio bacteriovorus
Bifunctional protein PutA experimental SAS data
DAMMIF model
Biophysical investigation of type A PutAs reveals a conserved core oligomeric structure.
SASDCF6 – HIT family hydrolase protein from Vibrio fischeri. Northeast Structural Genomics Consortium target id VfR176
HIT family hydrolase experimental SAS data
PDB model
Small angle X-ray scattering as a complementary tool for high-throughput structural studies.
SASDC22 – Tandem LIM domains of the neuronal transcription factor homeobox protein CEH-14 fused to the LIM interaction domain of ceLIM-7
Homeobox protein CEH-14CeLIM-7 experimental SAS data
DAMMIN model
Interactions between LHX3- and ISL1-family LIM-homeodomain transcription factors are conserved in Caenorhabditis elegans.

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