Curated repository for small angle scattering data and models


SASBDB currently contains:


1202

experimental data sets

1766

models
339 experimental data sets on hold
591 models on hold

Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm.
SASBDB is a fully searchable curated repository of freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data.

Recent depositions:

SASDGF3 – Xrn1 resistance RNA1 from Zika virus

Xrn1 resistance RNA2 from Zika virus experimental SAS data
OTHER model
Sample: Xrn1 resistance RNA2 from Zika virus monomer, 22 kDa Zika virus RNA
Buffer: 20mM Tris-HCl, 100mM NaCl, 5mM MgCl2, pH: 7.5
Experiment: SAXS data collected at 12ID-B SAXS/WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2016 Dec 9
Long non‐coding subgenomic flavivirus RNAs have extended 3D structures and are flexible in solution EMBO reports (2019)
Zhang Y, Zhang Y, Liu Z, Cheng M, Ma J, Wang Y, Qin C, Fang X
RgGuinier 2.4 nm
Dmax 8.5 nm
VolumePorod 34 nm3

SASDFD3 – Filamin A Ig-like domains 4-6 (FLNa4-6)
Filamin A Ig-like domains 4-6 experimental SAS data
DAMFILT model
Critical Structural Defects Explain Filamin A Mutations Causing Mitral Valve Dysplasia
SASDE79 – Interleukin-18 receptor 1, IL-18Rα-ECD
Interleukin-18 receptor 1 experimental SAS data
BILBOMD model
Functional Relevance of Interleukin-1 Receptor Inter-domain Flexibility for Cytokine Binding and Signaling.
SASDF86 – Human Galectin-10 (Tyr69Glu mutant)
Galectin-10 Tyr69Glu experimental SAS data
PDB model
Protein crystallization promotes type 2 immunity and is reversible by antibody treatment.
SASDFD7 – Pseudomonas putida CBB5 NdmAB complex - static
Methylxanthine N1-demethylase NdmAMethylxanthine N3-demethylase NdmB experimental SAS data
DAMMIF model
Structural and Mechanistic Insights into Caffeine Degradation by the Bacterial N-Demethylase Complex.
SASDFD6 – Protein kinase YopO - cytoplasmic 1 actin complex
Protein kinase YopOActin, cytoplasmic 1 experimental SAS data
CUSTOM IN-HOUSE model
Studying Conformational Changes of the Yersinia Type-III-Secretion Effector YopO in Solution by Integrative Structural Biology.

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