Curated repository for small angle scattering data and models


SASBDB currently contains:


807

experimental data sets

1217

models
165 experimental data sets on hold
191 models on hold

Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm.
SASBDB is a fully searchable curated repository of freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data.

Recent depositions:

SASDD32 – DNA-(adenine N6)-methyltransferase from Acinetobacter baumannii ATCC 17978

DNA-(adenine N6)-methyltransferase experimental SAS data
DAMMIN model
Sample: DNA-(adenine N6)-methyltransferasemonomer, 49 kDa Acinetobacter baumannii ATCC ... protein
Buffer: 150mM NaCl, 10mM Tris, 1mM DTT, 5% v/v glycerol, pH: 7.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Sep 30
Recombinant production of A1S_0222 from Acinetobacter baumannii ATCC 17978 and confirmation of its DNA-(adenine N6)-methyltransferase activity. Protein Expr Purif 151:78-85 (2018)
Blaschke U, Suwono B, Zafari S, Ebersberger I, Skiebe E, Jeffries CM, Svergun DI, Wilharm G
RgGuinier 2.9 nm
Dmax 11.1 nm
VolumePorod 96 nm3

SASDDW4 – Procollagen lysyl hydroxylase LH3 measured using SEC-SAXS
Procollagen lysyl hydroxylase LH3 experimental SAS data
GASBOR model
Molecular architecture of the multifunctional collagen lysyl hydroxylase and glycosyltransferase LH3.
SASDCM9 – Ammonium transporter Ks-Amt5
ammonium sensor/transducer experimental SAS data
CORAL model
Signaling ammonium across membranes through an ammonium sensor histidine kinase.
SASDD83 – Apolipoprotein D (ApoD) tetramer
Apolipoprotein D experimental SAS data
SASREF CV model
Identification of a novel tetrameric structure for human apolipoprotein-D.
SASDDG7 – Armless mitochondrial tRNA-Ile from Romanomermis culicivorax
Isoleucyl transfer RNA experimental SAS data
PYMOL model
Small but large enough: structural properties of armless mitochondrial tRNAs from the nematode Romanomermis culicivorax.
SASDDG6 – Photoreceptor sensory box 1 dark-state (SB1-LOV-R66I)
Sensory box protein dark-state experimental SAS data
Photoreceptor sensory box 1 dark-state (SB1-LOV-R66I) Rg histogram
Small-angle X-ray scattering study of the kinetics of light-dark transition in a LOV protein.

Browse the contents according to:

Organism
Macromolecule type
Model type
Dissemination type