Curated repository for small angle scattering data and models


SASBDB currently contains:


1771

experimental data sets

2697

models
476 experimental data sets on hold
552 models on hold

Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm.
SASBDB is a fully searchable curated repository of freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data.

Recent depositions:

SASDJB5 – Nipah virus phosphoprotein, N-terminal amino acids 1-406 (PNT)

Phosphoprotein experimental SAS data
Nipah virus phosphoprotein, N-terminal amino acids 1-406 (PNT) Rg histogram
Sample: Phosphoprotein monomer, 45 kDa Nipah henipavirus protein
Buffer: 20 mM Tris-HCl, 0.3 M NaCl, 5 mM DTT, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2018 May 3
Ensemble description of the intrinsically disordered N-terminal domain of the Nipah virus P/V protein from combined NMR and SAXS. Sci Rep 10(1):19574 (2020)
Schiavina M, Salladini E, Murrali MG, Tria G, Felli IC, Pierattelli R, Longhi S
RgGuinier 6.2 nm
Dmax 23.0 nm
VolumePorod 210 nm3

X-ray repair cross-complementing proteins 5ΔCTR and 6
X-ray repair cross-complementing protein 6X-ray repair cross-complementing protein 5 ΔCTR experimental SAS data
Visualizing functional dynamicity in the DNA-dependent protein kinase holoenzyme DNA-PK complex by integrating SAXS with cryo-EM. Prog Biophys Mol Biol 2020 Sep 20;
Prog Biophys Mol Biol (2020 Sep 20)
S. epidermidis extracellular matrix binding protein (Embp) FG-repeats
Extracellular matrix binding protein FG-repeats experimental SAS data
A Giant Extracellular Matrix Binding Protein of Staphylococcus epidermidis Binds Surface-Immobilized Fibronectin via a Novel Mechanism. mBio 2020 Oct 20;11(5)
mBio 11(5) (2020 Oct 20)
Bovine serum albumin, purified monomer - SEC-SAXS coupled to multiangle laser and quasi-elastic light scattering (MALLS and QELS)
Bovine serum albumin experimental SAS data
Adding Size Exclusion Chromatography (SEC) and Light Scattering (LS) Devices to Obtain High-Quality Small Angle X-Ray Scattering (SAXS) Data Crystals 2020 Oct 27 10(11):975
Crystals 10(11):975 (2020 Oct 27)
Polyglutamine protein ataxin-3 (Q54)
Ataxin-3 (polyglutamine protein ataxin-3 (Q54)) experimental SAS data
Capturing the Conformational Ensemble of the Mixed Folded Polyglutamine Protein Ataxin-3. Structure 2020 Oct 13;
Structure (2020 Oct 13)
Plasmodium falciparum myosin essential light chain, N-terminal domain
Myosin essential light chain experimental SAS data
Structural role of essential light chains in the apicomplexan glideosome. Commun Biol 2020 Oct 13;3(1):568
Commun Biol 3(1):568 (2020 Oct 13)

Browse the contents according to:

Organism
Macromolecule type
Model type
Dissemination type
To cite SASBDB refer to: Kikhney AG, Borges CR, Molodenskiy DS, Jeffries CM, Svergun DI (2020) SASBDB: Towards an automatically curated andvalidated repository for biological scattering data. Protein Science 29(1); 66-75.