SASDMU7 – Apt31 - ssDNA aptamer specific to the receptor-binding domain of SARS-CoV-2

ssDNA aptamer Apt31 specific to the receptor-binding domain of SARS-CoV-2 experimental SAS data
GROMACS model
Sample: ssDNA aptamer Apt31 specific to the receptor-binding domain of SARS-CoV-2 monomer, 10 kDa Artificially synthesized DNA
Buffer: Tris-HCl, pH: 7.4
Experiment: SAXS data collected at 13A, Taiwan Photon Source on 2020 Dec 18
Structure and Interaction Based Design of Anti‐SARS‐CoV‐2 Aptamers Chemistry – A European Journal (2022)
Mironov V, Shchugoreva I, Artyushenko P, Morozov D, Borbone N, Oliviero G, Zamay T, Moryachkov R, Kolovskaya O, Lukyanenko K, Song Y, Merkuleva I, Zabluda V, Peters G, Koroleva L, Veprintsev D, Glazyr...
RgGuinier 1.9 nm
Dmax 6.5 nm
VolumePorod 12 nm3

SASDN52 – SANS data from cytochrome c' from Alcaligenes xylosoxidans at pD = 1.7

Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' monomer, 14 kDa Achromobacter xylosoxidans protein
Buffer: Phosphate Buffer pD 1.7, pH: 1.7
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 2.3 nm
Dmax 8.6 nm
VolumePorod 13 nm3

SASDN62 – SANS data from cytochrome c' from Alcaligenes xylosoxidans at pD = 6.4

Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' dimer, 27 kDa Alcaligenes protein
Buffer: Phosphate Buffer pD 6.4, pH: 6.4
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 1.8 nm
Dmax 5.5 nm
VolumePorod 11 nm3

SASDN72 – SANS data from cytochrome c' from Alcaligenes xylosoxidans at pD = 9.6

Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' dimer, 27 kDa Alcaligenes protein
Buffer: Phosphate Buffer pD 9.6, pH: 9.6
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 1.9 nm
Dmax 5.3 nm
VolumePorod 10 nm3

SASDN82 – SANS data from cytochrome c' from Alcaligenes xylosoxidans at pD = 13

Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' monomer, 14 kDa Achromobacter xylosoxidans protein
Buffer: Phosphate Buffer pD 13, pH: 13
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 4.8 nm
Dmax 9.0 nm
VolumePorod 20 nm3

SASDNA3 – Association of the CPAP N-termini coiled-coil domain with the CP110 C-termini coiled-coil region

centrosomal-P4.1-associated-proteinCentriolar coiled-coil protein of 110 kDa experimental SAS data
DAMMIF model
Sample: centrosomal-P4.1-associated-protein monomer, 12 kDa Homo sapiens protein
Centriolar coiled-coil protein of 110 kDa dimer, 20 kDa Homo sapiens protein
Buffer: 50 mM HEPES, pH 7.5, 100 mM NaCl, 1 mM DTT, 1 mM MgCl2, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Feb 23
Microtubule plus-end regulation by centriolar cap proteins (2021)
Ogunmolu F, Moradi S, Volkov V, van Hoorn C, Wu J, Andrea N, Hua S, Jiang K, Vakonakis I, Potocnjak M, Herzog F, Gigant B, Gudimchuk N, Stecker K, Dogterom M, Steinmetz M, Akhmanova A
RgGuinier 3.5 nm
Dmax 12.2 nm
VolumePorod 35 nm3

SASDNB3 – Homodimerisation of the CP110 C-terminus coiled-coil domain

Centriolar coiled-coil protein of 110 kDa experimental SAS data
DAMMIF model
Sample: Centriolar coiled-coil protein of 110 kDa dimer, 20 kDa Homo sapiens protein
Buffer: 50 mM HEPES, pH 7.5, 100 mM NaCl, 1 mM DTT, 1 mM MgCl2, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Feb 23
Microtubule plus-end regulation by centriolar cap proteins (2021)
Ogunmolu F, Moradi S, Volkov V, van Hoorn C, Wu J, Andrea N, Hua S, Jiang K, Vakonakis I, Potocnjak M, Herzog F, Gigant B, Gudimchuk N, Stecker K, Dogterom M, Steinmetz M, Akhmanova A
RgGuinier 3.5 nm
Dmax 12.5 nm
VolumePorod 33 nm3

SASDMK7 – HomA outer membrane protein

HomA outer membrane protein experimental SAS data
DAMMIN model
Sample: HomA outer membrane protein dimer, 146 kDa Helicobacter pylori protein
Buffer: 20 mM Tris-Cl, 200 mM NaCl, 5 mM β-mercaptoethanol, pH: 8
Experiment: SAXS data collected at BL-18, INDUS-2 on 2021 Feb 2
Biophysical characterization of the homodimers of HomA and HomB, outer membrane proteins of Helicobacter pylori. Sci Rep 11(1):24471 (2021)
Tamrakar A, Singh R, Kumar A, Makde RD, Ashish, Kodgire P
RgGuinier 8.3 nm
Dmax 28.2 nm
VolumePorod 426 nm3

SASDML7 – HomB outer membrane protein

HomB outer membrane protein experimental SAS data
DAMMIN model
Sample: HomB outer membrane protein dimer, 148 kDa Helicobacter pylori protein
Buffer: 20 mM Tris-Cl, 200 mM NaCl, 5 mM β-mercaptoethanol, pH: 8
Experiment: SAXS data collected at BL-18, INDUS-2 on 2021 Feb 2
Biophysical characterization of the homodimers of HomA and HomB, outer membrane proteins of Helicobacter pylori. Sci Rep 11(1):24471 (2021)
Tamrakar A, Singh R, Kumar A, Makde RD, Ashish, Kodgire P
RgGuinier 8.2 nm
Dmax 27.1 nm
VolumePorod 500 nm3

SASDD97 – Synthetic FRET biosensor Twitch 2B Ca-bound

Synthetic FRET biosensor Twitch 2B experimental SAS data
Synthetic FRET biosensor Twitch 2B Kratky plot
Sample: Synthetic FRET biosensor Twitch 2B monomer, 62 kDa synthetic construct protein
Buffer: 20 mM MOPS 100 mM NaCl 5 mM CaCl2, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2015 Mar 17
Synthetic FRET biosensor Twitch 2B
Pablo Trigo Mourino
RgGuinier 2.7 nm

2544 hits found.