MPAC Delta132

Robert Lindner.

SASDDX9 – PAS fold family protein mPAC-Δ132 with the addition of adenosine-5'-[(α,β)-methyleno]triphosphate in the dark state (mPAC-Δ132, dark + ApCpp)

PAS fold family
MWexperimental 83 kDa
MWexpected 78 kDa
VPorod 99 nm3
log I(s) 8.29×100 8.29×10-1 8.29×10-2 8.29×10-3
PAS fold family small angle scattering data  s, nm-1
ln I(s)
PAS fold family Guinier plot ln 8.29×100 Rg: 4.0 nm 0 (4.0 nm)-2 s2
(sRg)2I(s)/I(0)
PAS fold family Kratky plot 1.104 0 3 sRg
p(r)
PAS fold family pair distance distribution function Rg: 3.8 nm 0 Dmax: 12.8 nm

Data validation


Fits and models


log I(s)
 s, nm-1
PAS fold family OTHER model

log I(s)
 s, nm-1
PAS fold family DAMFILT model
PAS fold family GASBOR model

Synchrotron SAXS measurements (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle; λ = 0.11 nm) were carried out at the beam line X12SA of the Swiss Light Source (Paul Scherrer Institut, Villigen, Switzerland). Quartz capillaries (inner diameter 1 mm) were mounted in a sample holder and filled with buffer (20 mM HEPES, 150 mM NaCl, 5 mM MgCl2, 5 % w/v glycerol, 1 mM ApCpp, pH 7.5). The sample holder was cooled to 10 °C for all measurements. Scattering of the buffer was determined at 20 positions along the capillary (spacing 0.5 mm), exposing each position with 11.2 keV photons for 0.5 s using 200 successive frames. Each position was measured 10 times and scattering intensities, after radial averaging to produce 1D-scattering patterns, were averaged. Scattered X-rays were detected by a Pilatus 2M detector (Dectris, Baden-Dättwil, Switzerland) at the end of an evacuated flight tube, 2.13 m from the sample position. Buffer was replaced by the protein sample without moving the sample holder or the capillaries. Lights in the experimental hutch were switched off and after 5 minutes, scattering of the protein-containing solutions was measured at the same positions using the procedure described above. Solute concentrations ranging between 5.1 and 9.1 mg/ml were measured and the concentration series data extrapolated to infinite dilution generating the final SAXS profile displayed in this entry. GASBOR was run 10 times to generate bead-model reconstructions (an averaged representation, top, and individual model, bottom).

Storage temperature = UNKNOWN

PAS fold family (mPAC)
Mol. type   Protein
Organism   Coleofasciculus chthonoplastes PCC 7420
Olig. state   Dimer
Mon. MW   39.0 kDa
 
UniProt   B4VKN6 (133-483)
Sequence   FASTA