An intrinsically disordered transcription activation domain increases the DNA binding affinity and reduces the specificity of NFκB p50/RelA.

Baughman HER, Narang D, Chen W, Villagrán Suárez AC, Lee J, Bachochin MJ, Gunther TR, Wolynes PG, Komives EA, J Biol Chem :102349 (2022) Europe PMC

SASDHC5 – Nuclear factor kB p50/RelA heterodimer

Transcription factor p65 19-549
NF-kappa-B p105 subunit 39-350
MWexperimental 98 kDa
MWexpected 94 kDa
VPorod 183 nm3
log I(s) 2.73×101 2.73×100 2.73×10-1 2.73×10-2
Transcription factor p65 19-549 NF-kappa-B p105 subunit 39-350 small angle scattering data  s, nm-1
ln I(s)
Transcription factor p65 19-549 NF-kappa-B p105 subunit 39-350 Guinier plot ln 2.73×101 Rg: 4.6 nm 0 (4.6 nm)-2 s2
(sRg)2I(s)/I(0)
Transcription factor p65 19-549 NF-kappa-B p105 subunit 39-350 Kratky plot 1.104 0 3 sRg
p(r)
Transcription factor p65 19-549 NF-kappa-B p105 subunit 39-350 pair distance distribution function Rg: 4.6 nm 0 Dmax: 15.3 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Transcription factor p65 19-549 NF-kappa-B p105 subunit 39-350 BILBOMD model

log I(s)
 s, nm-1
Transcription factor p65 19-549 NF-kappa-B p105 subunit 39-350 BILBOMD model

Synchrotron SAXS data from solutions of the nuclear factor kB p50/RelA heterodimer in 25 mM Tris.Cl, 150 mM NaCl, 1 mM DTT, 0.5 mM EDTA, pH 7.5 were collected on the 12.3.1 (SIBYLS) beam line at the Advanced Light Source (ALS; Berkeley, CA, USA) using a Pilatus3 X 2M detector at a sample-detector distance of 2 m and at a wavelength of λ = 0.127 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 2.5 and 5 mg/ml were measured at 10°C. 50 successive 15 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentrations were extrapolated to infinite dilution and merged with the higher concentration data to yield the final composite scattering curve.

Storage temperature = UNKNOWN

Transcription factor p65 19-549 (Rela)
Mol. type   Protein
Organism   Mus musculus
Olig. state   Monomer
Mon. MW   58.4 kDa
 
UniProt   Q04207 (19-549)
Sequence   FASTA
 
NF-kappa-B p105 subunit 39-350 (Nfkb1)
Mol. type   Protein
Organism   Mus musculus
Olig. state   Monomer
Mon. MW   35.9 kDa
 
UniProt   P25799 (39-350)
Sequence   FASTA