BonA from Acinetobacter baumannii Forms a Divisome-Localized Decamer That Supports Outer Envelope Function.

Grinter R Morris FC, Dunstan RA, Leung PM, Kropp A, Belousoff M, Gunasinghe SD, Scott NE, Beckham S, Peleg AY, Greening C, Li J, Heinz E, Lithgow T, mBio :e0148021 (2021) Europe PMC

SASDJW3 – YraP from Acinetobacter baumannii full-length, minus signal-peptide and acyl anchoring cysteine

BON domain protein
MWexperimental 318 kDa
MWexpected 229 kDa
VPorod 546 nm3
log I(s) 1.28×10-1 1.28×10-2 1.28×10-3 1.28×10-4
BON domain protein small angle scattering data  s, nm-1
ln I(s)
BON domain protein Guinier plot ln 1.29×10-1 Rg: 4.7 nm 0 (4.7 nm)-2 s2
(sRg)2I(s)/I(0)
BON domain protein Kratky plot 1.104 0 3 sRg
p(r)
BON domain protein pair distance distribution function Rg: 4.8 nm 0 Dmax: 16.4 nm

Data validation


Fits and models


log I(s)
 s, nm-1
BON domain protein DAMMIF model

log I(s)
 s, nm-1
BON domain protein DAMMIF model

Synchrotron SAXS data from solutions of YraP from Acinetobacter baumannii in 20 mM Tris, 150 mM NaCl, 0.03 % NaN3, 5.0 % glycerol, pH 7.8 were collected on the SAXS/WAXS beam line at the Australian Synchrotron (Melbourne, Australia) using a Pilatus 1M detector at a sample-detector distance of 2.7 m and at a wavelength of λ = 0.10322 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 50.00 μl sample at 10.5 mg/ml was injected at a 0.40 ml/min flow rate onto a GE Superdex 200 Increase 5/150 column at 20°C. 20 successive 0.100 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

SEC-SAXS analysis of the YraP protein from Acinetobacter baumannii, with the signal peptide and acyl-chain modified cysteine removed. In the cell, the protein has been experimentally shown to localize to the outer membrane. In solution, the protein has been shown to adopt a decameric oligomerization state.

BON domain protein (YraP (20-235))
Mol. type   Protein
Organism   Acinetobacter baumannii
Olig. state   Decamer
Mon. MW   22.9 kDa
 
UniProt   V5VFJ0 (20-235)
Sequence   FASTA