SFPQ214-598(R542C)/NONO53-312 and the SFPQ276-565/NONO53-312 concentration dependent dimer-tetramer transition

Heidar Koning.

SASDMV7 – The tetramer of splicing factor, proline- and glutamine-rich and Non-POU domain-containing octamer-binding protein (SFPQ214-598(R542C)/NONO53-312)

Splicing factor, proline- and glutamine-rich
Non-POU domain-containing octamer-binding protein
MWexperimental 208 kDa
MWexpected 149 kDa
VPorod 304 nm3
log I(s) 6.39×10-2 6.39×10-3 6.39×10-4 6.39×10-5
Splicing factor, proline- and glutamine-rich Non-POU domain-containing octamer-binding protein small angle scattering data  s, nm-1
ln I(s)
Splicing factor, proline- and glutamine-rich Non-POU domain-containing octamer-binding protein Guinier plot ln 6.40×10-2 Rg: 5.5 nm 0 (5.5 nm)-2 s2
(sRg)2I(s)/I(0)
Splicing factor, proline- and glutamine-rich Non-POU domain-containing octamer-binding protein Kratky plot 1.104 0 3 sRg
p(r)
Splicing factor, proline- and glutamine-rich Non-POU domain-containing octamer-binding protein pair distance distribution function Rg: 5.6 nm 0 Dmax: 20.4 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Splicing factor, proline- and glutamine-rich Non-POU domain-containing octamer-binding protein PDB (PROTEIN DATA BANK) model

log I(s)
 s, nm-1
Splicing factor, proline- and glutamine-rich Non-POU domain-containing octamer-binding protein DAMMIF model

Synchrotron SAXS data from solutions of SFPQ214-598(R542C)/NONO53-312 in 20 mM Tris pH 7.5, 250 mM NaCl, were collected on the SAXS/WAXS beam line at the Australian Synchrotron (Melbourne, Australia) using a Pilatus3 S 2M detector at a sample-detector distance of 3.5 m and at a wavelength of λ = 0.107812 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 60.00 μl sample at 6.8 mg/ml was injected onto a GE Superdex 200 Increase 5/150 column at 25°C. 700 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

A tetramer of SFPQ214-598(R542C)/NONO53-312 which forms when dimers of SFPQ214-598(R542C)/NONO53-312 bind to each other and become cross-linked by the formation of disulphide bond between the coiled-coil domains of SFPQ. Imperfect CRYSOL fit of our experimental data to a crystal structure of an SFPQ/NONO tetramer (6WMZ formatted as a tetramer). Our experimental construct contains additional residues (SFPQ214-275) which are not present in the crystal. The DAMMIF model conforms to the expected shape of a dumbbell. This matches the general shape of the crystal structure 6WMZ (as a tetramer). The additional regions below the DAMMIF model could be the contributions to the form factor from the DNA-binding domain (SFPQ214-275 which is predicted to be unstructured).

Splicing factor, proline- and glutamine-rich (SFPQ cysteine dimer)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Dimer
Mon. MW   44.4 kDa
 
UniProt   P23246 (214-598)
Sequence   FASTA
 
Non-POU domain-containing octamer-binding protein (NONO dimer)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Dimer
Mon. MW   30.1 kDa
 
UniProt   Q15233 (53-312)
Sequence   FASTA
 
PDB ID   6WMZ