SFPQ214-598(R542C)/NONO53-312 and the SFPQ276-565/NONO53-312 concentration dependent dimer-tetramer transition

Heidar Koning.

SASDMW7 – Concentration dependent dimer-tetramer transition of splicing factor, proline- and glutamine-rich with Non-POU domain-containing octamer-binding protein (SFPQ276-565/NONO53-312)

Splicing factor, proline- and glutamine-rich (276-565)
Non-POU domain-containing octamer-binding protein (53-312)
MWexperimental 62 kDa
MWexpected 64 kDa
VPorod 105 nm3
log I(s) 1.97×10-2 1.97×10-3 1.97×10-4 1.97×10-5
Splicing factor, proline- and glutamine-rich (276-565) Non-POU domain-containing octamer-binding protein (53-312) small angle scattering data  s, nm-1
ln I(s)
Splicing factor, proline- and glutamine-rich (276-565) Non-POU domain-containing octamer-binding protein (53-312) Guinier plot ln 1.98×10-2 Rg: 3.0 nm 0 (3.0 nm)-2 s2
(sRg)2I(s)/I(0)
Splicing factor, proline- and glutamine-rich (276-565) Non-POU domain-containing octamer-binding protein (53-312) Kratky plot 1.104 0 3 sRg
p(r)
Splicing factor, proline- and glutamine-rich (276-565) Non-POU domain-containing octamer-binding protein (53-312) pair distance distribution function Rg: 3.1 nm 0 Dmax: 12.1 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Splicing factor, proline- and glutamine-rich (276-565) Non-POU domain-containing octamer-binding protein (53-312) DAMMIF model

Synchrotron SAXS data from solutions of SFPQ276-565/NONO53-312 in 20 mM Tris pH 7.5, 250 mM NaCl, were collected on the SAXS/WAXS beam line at the Australian Synchrotron (Melbourne, Australia) using a Pilatus3 S 2M detector at a wavelength of λ = 0.10781 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 0.32 mg/ml was measured at 25°C. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

The primary data for this entry shows the SAXS profile of the dimeric form of SFPQ276-565/NONO53-312 that occurs at low protein concentrations (~0.32 mg/ml). At higher sample concentrations, the protein undergoes a concentration dependent self-association into a tetramer as is showcased by a change in scattering and structure. We are aware of this phenomenon because of a cysteine mutated construct (also deposited) which constitutively forms tetramers and previous experiments in the literature. The model we have deposited is a DAMMIF model of the protein at 0.32mg/ml, it matches the approximate dimensions of a truncated dimer of SFPQ276-565/NONO53-312 reasonably well. The full concentration series data ranging up to 6.8mg/ml as well as a P(r) function are made available in the full entry zip archive.

Splicing factor, proline- and glutamine-rich (276-565) (SFPQ276-565)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   34 kDa
 
UniProt   P23246-1 (276-565)
Sequence   FASTA
 
Non-POU domain-containing octamer-binding protein (53-312) (NONO (53-312))
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   30.1 kDa
 
UniProt   Q15233-1 (53-312)
Sequence   FASTA