Diverse p120RasGAP interactions with doubly phosphorylated partners EphB4, p190RhoGAP and Dok1

Vish K, Stiegler A, Boggon T, Journal of Biological Chemistry :105098 (2023) DOI

SASDRL6 – SH2-SH3-SH2 domains of Ras GTPase-activating protein 1 (p120RasGAP) bound to a doubly phosphorylated p190RhoGAP peptide

Rho GTPase-activating protein 35
Ras GTPase-activating protein 1 (C236S, C261S, C372S, C402S)
MWexperimental 31 kDa
MWexpected 35 kDa
VPorod 44 nm3
log I(s) 1.13×10-2 1.13×10-3 1.13×10-4 1.13×10-5
Rho GTPase-activating protein 35 Ras GTPase-activating protein 1 (C236S,  C261S, C372S, C402S) small angle scattering data  s, nm-1
ln I(s)
Rho GTPase-activating protein 35 Ras GTPase-activating protein 1 (C236S,  C261S, C372S, C402S) Guinier plot ln 1.14×10-2 Rg: 2.4 nm 0 (2.4 nm)-2 s2
(sRg)2I(s)/I(0)
Rho GTPase-activating protein 35 Ras GTPase-activating protein 1 (C236S,  C261S, C372S, C402S) Kratky plot 1.104 0 3 sRg
p(r)
Rho GTPase-activating protein 35 Ras GTPase-activating protein 1 (C236S,  C261S, C372S, C402S) pair distance distribution function Rg: 2.4 nm 0 Dmax: 7.7 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of SH2-SH3-SH2 domains of Ras GTPase-activating protein 1 (p120RasGAP) bound to a doubly phosphorylated p190RhoGAP peptide in 20 mM Tris pH 8, 350 mM NaCl, 1 mM DTT, pH 8 were collected on the BioCAT 18ID beam line at the Advanced Photon Source (APS), Argonne National Laboratory storage ring (Lemont, IL, USA) using a Pilatus3 X 1M detector at a sample-detector distance of 3.6 m and at a wavelength of λ = 0.1003 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 320.00 μl sample at 3.8 mg/ml was injected at a 0.50 ml/min flow rate onto a GE Superdex 200 Increase 10/300 column at 22°C. 1313 successive 0.500 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

On the day of data collection the samples were thawed and spun down. 1 mM DTT was added to the samples and buffer. The samples were injected onto a GE Superdex 200 Increase column at 22˚C in buffer containing 20 mM Tris pH 8, 350 mM NaCl, 1 mM DTT at a flow rate of 0.5 mL/min. Data were collected at APS’s BioCAT Beamline18ID using synchrotron radiation from Undulator A. As the sample came off of the column it was first detected by UV, followed by Wyatt DAWN HELEOS II MALS+DLS and Wyatt Optilab T-rEX dRI detectors for measuring molecular weight through MALS-DLS-RI analysis. Following MALS-DLS, the sample flowed to the SAXS sample chamber. The SAXS data were normalized using an active beamstop containing a silicon PIN diode.

Rho GTPase-activating protein 35 (p190RhoGAP)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   3.3 kDa
 
UniProt   Q9NRY4 (1083-1111)
Sequence   FASTA
 
Ras GTPase-activating protein 1 (C236S, C261S, C372S, C402S) (p120RasGAP (RASA1))
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   31.4 kDa
 
UniProt   P20936 (174-444)
Sequence   FASTA