Polyubiquitin ligand-induced phase transitions are optimized by spacing between ubiquitin units

Galagedera S Dao T, Enos S, Chaudhuri A, Schmit J, CastaƱeda C, Proceedings of the National Academy of Sciences 120(42) (2023) DOI

SASDRN7 – M1-linked tetraubiquitin Pro-Ser/Gly-Ser fusion, M1(1-76)-PS(GS)4-Ub4

Tetraubiquitin, M1(1-76)-PS(GS)4-Ub4
MWI(0) 33 kDa
MWexpected 36 kDa
VPorod 50 nm3
log I(s) 2.26×10-2 2.26×10-3 2.26×10-4 2.26×10-5
Tetraubiquitin, M1(1-76)-PS(GS)4-Ub4 small angle scattering data  s, nm-1
ln I(s)
Tetraubiquitin, M1(1-76)-PS(GS)4-Ub4 Guinier plot ln 2.27×10-2 Rg: 3.4 nm 0 (3.4 nm)-2 s2
(sRg)2I(s)/I(0)
Tetraubiquitin, M1(1-76)-PS(GS)4-Ub4 Kratky plot 1.104 0 3 sRg
p(r)
Tetraubiquitin, M1(1-76)-PS(GS)4-Ub4 pair distance distribution function Rg: 3.6 nm 0 Dmax: 13.9 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of M1-linked tetraubiquitin Pro-Ser/Gly-Ser fusion, M1(1-76)-PS(GS)4-Ub4 in 20 mM sodium phosphate, 0.5 mM EDTA, 0.02 % NaN3, pH 6.8 were collected on the BioCAT 18ID beam line at the Advanced Photon Source (APS), Argonne National Laboratory storage ring (Lemont, IL, USA) using a Pilatus3 X 1M detector at a sample-detector distance of 3.7 m and at a wavelength of λ = 0.1033 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 6.58 mg/ml was measured at 20°C. 11 successive 0.500 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Tetraubiquitin, M1(1-76)-PS(GS)4-Ub4 (M1(1-76)-PS(GS)4)
Mol. type   Protein
Organism   synthetic construct
Olig. state   Monomer
Mon. MW   36.5 kDa
Sequence   FASTA