The pathogen-encoded signalling receptor Tir exploits host-like intrinsic disorder for infection.

Vieira MFM, Hernandez G Zhong Q, Arbesú M, Veloso T, Gomes T, Martins ML, Monteiro H, Frazão C, Frankel G, Zanzoni A, Cordeiro TN, Commun Biol 7(1):179 (2024) Europe PMC

SASDRQ5 – Small beta-barrel domain in the N-terminal region of the Translocated Intimin Receptor (Tir76-180)

Translocated intimin receptor Tir
MWI(0) 14 kDa
MWexpected 12 kDa
VPorod 21 nm3
log I(s) 1.24×101 1.24×100 1.24×10-1 1.24×10-2
Translocated intimin receptor Tir small angle scattering data  s, nm-1
ln I(s)
Translocated intimin receptor Tir Guinier plot ln 1.25×101 Rg: 1.7 nm 0 (1.7 nm)-2 s2
(sRg)2I(s)/I(0)
Translocated intimin receptor Tir Kratky plot 1.104 0 3 sRg
p(r)
Translocated intimin receptor Tir pair distance distribution function Rg: 1.8 nm 0 Dmax: 7 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of the N-terminal region of the Translocated Intimin Receptor (Tir76-180) in 100 mM Tris-HCl, 150 mM NaCl, 1 mM EDTA, pH 8 were collected on the B21 beam line at the Diamond Light Source (Didcot, UK) using a Pilatus 2M detector at a sample-detector distance of 3.69 m and at a wavelength of λ = 0.0954 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 50.00 μl sample at 12.6 mg/ml was injected at a 0.075 ml/min flow rate onto a Shodex KW403-4F column at 10°C. 520 successive 2 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged. The scattering intensities from SBB-tir elution peak region (21-frames) were buffer subtracted and averaged using the ScÅtter software (version 3Q) to produce the averaged SEC-SAXS profile. From this profile, the pair-wise distance distribution function, P(r), was obtained by indirect Fourier Transform with GNOM (version 5.0) using a momentum transfer range of 0.14 < s < 4.7 nm-1. The Rg values were estimated by applying the Guinier approximation in the range sRg < 1.3.

Translocated intimin receptor Tir (SBB-tir)
Mol. type   Protein
Organism   Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Olig. state   Monomer
Mon. MW   12.0 kDa
 
UniProt   B7UM99 (76-180)
Sequence   FASTA