Fuzzy recognition by the prokaryotic transcription factor HigA2 from Vibrio cholerae.

Hadži S, Živič Z, Kovačič M, Zavrtanik U, Haeserts S, Charlier D, Plavec J, Volkov AN, Lah J, Loris R, Nat Commun 15(1):3105 (2024) Europe PMC

SASDS76 – Antitoxin HigA-2

Antitoxin HigA-2
MWexperimental 25 kDa
MWexpected 23 kDa
VPorod 43 nm3
log I(s) 3.03×10-2 3.03×10-3 3.03×10-4 3.03×10-5
Antitoxin HigA-2 small angle scattering data  s, nm-1
ln I(s)
Antitoxin HigA-2 Guinier plot ln 3.04×10-2 Rg: 2.3 nm 0 (2.3 nm)-2 s2
(sRg)2I(s)/I(0)
Antitoxin HigA-2 Kratky plot 1.104 0 3 sRg
p(r)
Antitoxin HigA-2 pair distance distribution function Rg: 2.4 nm 0 Dmax: 9.6 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of antitoxin HigA-2 in 20 mM Tris pH 8, 200 mM NaCl were collected on the SWING beam line at SOLEIL (Saint-Aubin, France) using a AVIEX PCCD170170 detector at a sample-detector distance of 1.1 m and at a wavelength of λ = 0.1033 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 40.00 μl sample at 3.6 mg/ml was injected at a 0.20 ml/min flow rate onto a Shodex KW402.5-4F column at 15°C. 250 successive 0.750 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Antitoxin HigA-2
Mol. type   Protein
Organism   Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Olig. state   Dimer
Mon. MW   11.6 kDa
 
UniProt   Q9KMA5 (2-104)
Sequence   FASTA