Fuzzy recognition by the prokaryotic transcription factor HigA2 from Vibrio cholerae.

Hadži S Živič Z, Kovačič M, Zavrtanik U, Haeserts S, Charlier D, Plavec J, Volkov AN, Lah J, Loris R, Nat Commun 15(1):3105 (2024) Europe PMC

SASDS86 – Antitoxin HigA-2 in complex with a DNA operator sequence

Antitoxin HigA-2
DNA operator
MWexperimental 33 kDa
MWexpected 43 kDa
VPorod 57 nm3
log I(s) 4.73×10-2 4.73×10-3 4.73×10-4 4.73×10-5
Antitoxin HigA-2 DNA operator small angle scattering data  s, nm-1
ln I(s)
Antitoxin HigA-2 DNA operator Guinier plot ln 4.74×10-2 Rg: 2.7 nm 0 (2.7 nm)-2 s2
(sRg)2I(s)/I(0)
Antitoxin HigA-2 DNA operator Kratky plot 1.104 0 3 sRg
p(r)
Antitoxin HigA-2 DNA operator pair distance distribution function Rg: 2.8 nm 0 Dmax: 9.6 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of antitoxin HigA-2 in complex with a DNA operator sequence in 20 mM Tris pH 8, 200 mM NaCl were collected on the SWING beam line at SOLEIL (Saint-Aubin, France) using a AVIEX PCCD170170 detector at a sample-detector distance of 2.0 m and at a wavelength of λ = 0.1033 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 40.00 μl sample at 3.3 mg/ml was injected at a 0.20 ml/min flow rate onto a Shodex KW402.5-4F column at 15°C. 480 successive 0.990 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Antitoxin HigA-2
Mol. type   Protein
Organism   Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Olig. state   Dimer
Mon. MW   11.6 kDa
 
UniProt   Q9KMA5 (2-104)
Sequence   FASTA
 
DNA operator
Mol. type   DNA
Olig. state   Dimer
Mon. MW   10.1 kDa
Sequence   FASTA