SAXS studies of KAI2 catalytic mutants

Sabrina Davies.

SASDSB8 – Karrikin insensitive 2, KAI2 protein mutant H246Y with a synthetic strigolactone analogue ligand (monomer peak)

Probable esterase KAI2 - H246Y (KARRIKIN INSENSITIVE 2 - H246Y)
MWexperimental 46 kDa
MWexpected 30 kDa
VPorod 68 nm3
log I(s) 7.07×10-3 7.07×10-4 7.07×10-5 7.07×10-6
Probable esterase KAI2 - H246Y (KARRIKIN INSENSITIVE 2 - H246Y) small angle scattering data  s, nm-1
ln I(s)
Probable esterase KAI2 - H246Y (KARRIKIN INSENSITIVE 2 - H246Y) Guinier plot ln 7.08×10-3 Rg: 2.9 nm 0 (2.9 nm)-2 s2
(sRg)2I(s)/I(0)
Probable esterase KAI2 - H246Y (KARRIKIN INSENSITIVE 2 - H246Y) Kratky plot 1.104 0 3 sRg
p(r)
Probable esterase KAI2 - H246Y (KARRIKIN INSENSITIVE 2 - H246Y) pair distance distribution function Rg: 3.3 nm 0 Dmax: 13.2 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of Karrikin insensitive 2, KAI2 protein mutant H246Y with a synthetic strigolactone analogue ligand (monomer peak) in 20 mM HEPES, 150 mM imidazole, 150 mM NaCl, 10% (v/v) glycerol, pH 7.5 were collected on the SAXS/WAXS beam line at the Australian Synchrotron storage ring (Melbourne, Australia) using a Pilatus3 S 2M detector at a sample-detector distance of 2.5 m and at a wavelength of λ = 0.10332 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 50.00 μl sample at 8.1 mg/ml was injected at a 0.40 ml/min flow rate onto a GE Superdex 200 Increase 5/150 column at 24°C. 866 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

The H246Y KAI2 mutant protein was incubated with the synthetic strigolactone analogue desmethyl-GR24-enantiomer-5DS (dGR24ent-5DS). The experimental MW value was determined using the volume of correlation, Vc, method.

Probable esterase KAI2 - H246Y (KARRIKIN INSENSITIVE 2 - H246Y) (H246Y KAI2)
Mol. type   Protein
Organism   Arabidopsis thaliana
Olig. state   Monomer
Mon. MW   29.8 kDa
 
UniProt   Q9SZU7 (1-270)
Sequence   FASTA