Solution structure of the EMAPII domain of human aminoacyl-tRNA synthetase complex

Michal Taube.

SASDSL2 – Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 (EMAPII) at pH 8

Aminoacyl tRNA synthase complex-interacting multifunctional protein 1
MWI(0) 24 kDa
MWexpected 20 kDa
VPorod 27 nm3
log I(s) 4.76×10-1 4.76×10-2 4.76×10-3 4.76×10-4
Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 small angle scattering data  s, nm-1
ln I(s)
Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 Guinier plot ln 4.76×10-1 Rg: 1.9 nm 0 (1.9 nm)-2 s2
(sRg)2I(s)/I(0)
Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 Kratky plot 1.104 0 3 sRg
p(r)
Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 pair distance distribution function Rg: 2.0 nm 0 Dmax: 7.7 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 (EMAPII) at pH 8 Rg histogram Rg, nm
Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 EOM/RANCH model
Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 EOM/RANCH model

SAXS data from the solutions of EMAPII at 4 mg/ml concentratio in 50 mM Tris pH8, 150 mM NaCl, 1 mM DTT were collected using Xenocs Xeuss 2.0 System (Department of Biomedical Physics, Adam Mickiewicz University, Poznań, Poland) equipped with a MetalJet D2 microfocus X-ray generator and a Pilatus 3R 1M detector at a wavelength of λ = 0.134 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Before SAXS experiments protein sample was purified using SEC chromatography and concentrated to 4 mg/ml using Amicon Ultra 4, 3k centrifugal filter. Protein sample at 4.00 mg/ml concentration was measured at 20°C. 6x600 second frames were collected. The data were radially averaged and the scattering of the solvent was subtracted. Modeling of the EMAPII protein was performed using Ensemble Optimization Method (EOM) using NMR structure of the EMAPII protein (PDB ID: 8ONG, Entry Title: Structure of the endothelial monocyte activating polypeptide II (EMAP II) in solution) where first 19 amino acids where represented as dummy residues.

Cell temperature = UNKNOWN

Aminoacyl tRNA synthase complex-interacting multifunctional protein 1
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   20.2 kDa
 
UniProt   Q12904 (147-312)
Sequence   FASTA