BCL7 proteins, novel subunits of the mammalian SWI/SNF complex, bind the nucleosome core particle

Asgar Abbas kazrani.

SASDSY5 – Nucleosome (NCP) in complex with B cell lymphoma 7 protein family member A (BCL7A)

Isoform 2 of B-cell CLL/lymphoma 7 protein family member A
Histone H3.2
Histone H4
Histone H2A
Histone H2B 1.1
Widom 601 DNA sequence
MWI(0) 288 kDa
MWexpected 224 kDa
VPorod 400 nm3
log I(s) 2.83×10-1 2.83×10-2 2.83×10-3 2.83×10-4
Isoform 2 of B-cell CLL/lymphoma 7 protein family member A Histone H3.2 Histone H4 Histone H2A Histone H2B 1.1 Widom 601 DNA sequence small angle scattering data  s, nm-1
ln I(s)
Isoform 2 of B-cell CLL/lymphoma 7 protein family member A Histone H3.2 Histone H4 Histone H2A Histone H2B 1.1 Widom 601 DNA sequence Guinier plot ln 2.83×10-1 Rg: 4.7 nm 0 (4.7 nm)-2 s2
(sRg)2I(s)/I(0)
Isoform 2 of B-cell CLL/lymphoma 7 protein family member A Histone H3.2 Histone H4 Histone H2A Histone H2B 1.1 Widom 601 DNA sequence Kratky plot 1.104 0 3 sRg
Dmax: 24.4 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Isoform 2 of B-cell CLL/lymphoma 7 protein family member A Histone H3.2 Histone H4 Histone H2A Histone H2B 1.1 Widom 601 DNA sequence EOM/RANCH model

Synchrotron SAXS data from solutions of a nucleosome core particle (histones plus Widom 601 DNA) in complex with B cell lymphoma 7 protein family member A in 20 mM Tris-HCl , 50 mM KCl, 1 mM DTT, pH 8 were collected on the SWING beam line at SOLEIL (Saint-Aubin, France) using a Eiger 4M detector at a sample-detector distance of 2 m and at a wavelength of λ = 0.1 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 50.00 μl sample at 0.5 mg/ml was injected at a 0.30 ml/min flow rate onto a Agilent Bio SEC-5, 500Å column at 15°C. 780 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Isoform 2 of B-cell CLL/lymphoma 7 protein family member A (BCL7A)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   25.0 kDa
 
UniProt   Q4VC05-2 (1-231)
Sequence   FASTA
 
Histone H3.2
Mol. type   Protein
Organism   Xenopus laevis
Olig. state   Dimer
Mon. MW   15.4 kDa
 
UniProt   P84233 (1-135)
Sequence   FASTA
 
Histone H4 (H4)
Mol. type   Protein
Organism   Xenopus laevis
Olig. state   Dimer
Mon. MW   11.4 kDa
 
UniProt   P62799 (1-103)
Sequence   FASTA
 
Histone H2A (H2A)
Mol. type   Protein
Organism   Xenopus laevis
Olig. state   Dimer
Mon. MW   14.1 kDa
 
UniProt   Q6AZJ8 (1-130)
Sequence   FASTA
 
Histone H2B 1.1 (H2B)
Mol. type   Protein
Organism   Xenopus laevis
Olig. state   Dimer
Mon. MW   13.9 kDa
 
UniProt   P02281 (1-126)
Sequence   FASTA
 
Widom 601 DNA sequence
Mol. type   DNA
Organism   Escherichia coli
Olig. state   Dimer
Mon. MW   44.6 kDa
Sequence   FASTA
 
ALPHAFOLD ID   Q4VC05