Structural insights into IMP2 dimerization and RNA binding

Raktim Roy.

SASDUF4 – Insulin-like growth factor 2 mRNA-binding protein 2 (IMP2), dimer without RNA

Insulin-like growth factor 2 mRNA-binding protein 2
MWexperimental 128 kDa
MWexpected 132 kDa
VPorod 194 nm3
log I(s) 1.38×101 1.38×100 1.38×10-1 1.38×10-2
Insulin-like growth factor 2 mRNA-binding protein 2 small angle scattering data  s, nm-1
ln I(s)
Insulin-like growth factor 2 mRNA-binding protein 2 Guinier plot ln 1.38×101 Rg: 4.6 nm 0 (4.6 nm)-2 s2
(sRg)2I(s)/I(0)
Insulin-like growth factor 2 mRNA-binding protein 2 Kratky plot 1.104 0 3 sRg
p(r)
Insulin-like growth factor 2 mRNA-binding protein 2 pair distance distribution function Rg: 4.5 nm 0 Dmax: 14.2 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Insulin-like growth factor 2 mRNA-binding protein 2 CHIMERA model

Synchrotron SAXS data from solutions of insulin-like growth factor 2 mRNA-binding protein 2 (IMP2) in 20 mM HEPES, 2 mM MgCl2, 150 mM NaCl, 10% glycerol v/v, 2 mM β-mercaptoethanol, pH 7.4 were collected on the 16-ID (LiX) beam line at the National Synchrotron Light Source II (NSLS-II; Brookhaven National Laboratory, Upton, NY, USA) using dual Pilatus3 S 1M/Pilatus3 900 K detectors at a wavelength of λ = 0.11 nm and 1.5 mm path-length (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed and used to separate proteinaceous species. Samples were loaded into a 96-well auto-sampler plate prior to injection into a pre-equilibrated size exclusion-coupled small-angle X-ray scattering (SEC-SAXS) system. An Agilent 1260 Infinity Bio-Inert high-performance liquid chromatography (HPLC) with an auto-sampler was used for sample injection and SEC. The SEC parameters were as follows: A 100.00 μl sample at 5 mg/ml was injected at a 0.35 ml/min flow rate onto a Cytiva Superdex 200 5/150 column at 4°C. Successive 2 second data frames were collected during the course of 15-minute SEC-elution (three frames were selected across the sample elution peak). SAXS/WAXS images were radially integrated before being background subtracted using LIX specific python packages py4xs and lixtools. Subtracted profiles were exported and imported for analysis in BioXTAS RAW (RAW).

Insulin-like growth factor 2 mRNA-binding protein 2 (IMP2)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Dimer
Mon. MW   66.1 kDa
 
UniProt   Q9Y6M1 (1-599)
Sequence   FASTA