Structure of the aminoterminal domain of the birnaviral multifunctional VP3 protein and its unexplored critical role.

Ferrero DS Gimenez MC, Sagar A, Rodríguez JM, Castón JR, Terebiznik MR, Bernadó P, Verdaguer N, PNAS Nexus 3(12):pgae521 (2024) Europe PMC

SASDUR7 – Infectious Bursal Disease Virus VP3 (central domains at pH 8.0)

Structural polyprotein (Capsid protein VP3: K947R; Δ756-843; Δ977-1012)
MWexperimental 18 kDa
MWexpected 18 kDa
VPorod 21 nm3
log I(s) 1.25×103 1.25×102 1.25×101 1.25×100
Structural polyprotein (Capsid protein VP3: K947R; Δ756-843; Δ977-1012) small angle scattering data  s, nm-1
ln I(s)
Structural polyprotein (Capsid protein VP3: K947R; Δ756-843; Δ977-1012) Guinier plot ln 1.26×103 Rg: 2.5 nm 0 (2.5 nm)-2 s2
(sRg)2I(s)/I(0)
Structural polyprotein (Capsid protein VP3: K947R; Δ756-843; Δ977-1012) Kratky plot 1.104 0 3 sRg
Dmax: 10 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of Infectious Bursal Disease Virus VP3 (central domains) in 50 mM TRIS, 500 mM NaCl, 2 mM DTT, pH 8 were collected on the EMBL P12 beam line at PETRA III (DESY; Hamburg, Germany) using a Pilatus 6M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.123981 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 40.00 μl sample at 5 mg/ml was injected at a 0.50 ml/min flow rate onto a GE Superdex 200 5/150 column at 25°C. 202 successive 0.995 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Structural polyprotein (Capsid protein VP3: K947R; Δ756-843; Δ977-1012) (IBDV VP3)
Mol. type   Protein
Organism   Infectious bursal disease virus
Olig. state   Monomer
Mon. MW   17.8 kDa
 
UniProt   P61825 (844-976)
Sequence   FASTA