Similar but Distinct—Biochemical Characterization of the Staphylococcus aureus Serine Hydrolases FphH  and FphI

Fellner M, Randall G, Bitac I, Warrender A, Sethi A, Jelinek R, Kass I, Proteins: Structure, Function, and Bioinformatics (2024) DOI

SASDV64 – Serine hydrolase FphH with short chain esterase activity (Apo FphH)

Alpha/beta fold hydrolase
MWexperimental 16 kDa
MWexpected 28 kDa
VPorod 41 nm3
log I(s) 3.23×10-3 3.23×10-4 3.23×10-5 3.23×10-6
Alpha/beta fold hydrolase small angle scattering data  s, nm-1
ln I(s)
Alpha/beta fold hydrolase Guinier plot ln 3.24×10-3 Rg: 2.1 nm 0 (2.1 nm)-2 s2
(sRg)2I(s)/I(0)
Alpha/beta fold hydrolase Kratky plot 1.104 0 3 sRg
p(r)
Alpha/beta fold hydrolase pair distance distribution function Rg: 2.1 nm 0 Dmax: 6.5 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Alpha/beta fold hydrolase DAMFILT model
Alpha/beta fold hydrolase DAMMIF model

log I(s)
 s, nm-1
Alpha/beta fold hydrolase SREFLEX model

log I(s)
 s, nm-1
Alpha/beta fold hydrolase PDB (PROTEIN DATA BANK) model

Synchrotron SAXS data from solutions of Apo FphH in 100 mM NaCl, 10 mM HEPES, pH 7.6 were collected on the BioSAXS beam line at the Australian Synchrotron (Melbourne, Australia) using a Pilatus3 S 2M detector at a sample-detector distance of 2.5 m and at a wavelength of λ = 0.1 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 40.00 μl sample at 5.4 mg/ml was injected at a 0.40 ml/min flow rate onto a GE Superdex 75 Increase 5/150 column at 21°C. 16 successive 0.500 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

A serine hydrolase with short chain esterase activity, active in biofilm life cycle of S. aureus. Two shape reconstructions are displayed: 1) DAMFILT (top) derived from the volume and bead occupancy corrected spatial alignment of several individual DAMMIF models and; 2) An individual DAMMIF model example (bottom) with the corresponding fit to the data shown to the left.

Alpha/beta fold hydrolase (FphH)
Mol. type   Protein
Organism   Staphylococcus aureus
Olig. state   Monomer
Mon. MW   28.3 kDa
 
UniProt   A0A0D6HZA6 (1-246)
Sequence   FASTA
 
PDB ID   8G0N
 
PDB ID   8FTP