The UvrA2B2 pre-initiation complex from the Nucleotide Excision Repair pathway of Mycobacterium tuberculosis.

farheen jahan.

SASDV88 – Mycobacterium tuberculosis UvrA2.UvrB2 complex

UvrABC system protein A
UvrABC system protein B
MWexperimental 343 kDa
MWexpected 373 kDa
VPorod 1053 nm3
log I(s) 6.36×104 6.36×103 6.36×102 6.36×101
UvrABC system protein A UvrABC system protein B small angle scattering data  s, nm-1
ln I(s)
UvrABC system protein A UvrABC system protein B Guinier plot ln 6.37×104 Rg: 5.3 nm 0 (5.3 nm)-2 s2
(sRg)2I(s)/I(0)
UvrABC system protein A UvrABC system protein B Kratky plot 1.104 0 3 sRg
p(r)
UvrABC system protein A UvrABC system protein B pair distance distribution function Rg: 5.7 nm 0 Dmax: 15.8 nm

Data validation


Fits and models


log I(s)
 s, nm-1
UvrABC system protein A UvrABC system protein B GASBOR model

SAXS data from solutions of Mycobacterium tuberculosis UvrA2.UvrB2 complex in 50 mM Tris pH 8, 200 mM NaCl, 2% glycerol were collected using an Anton Paar SAXSpace instrument at the CSIR-Central Drug Research Institute (Lucknow India) equipped with a Mythen2 R 1K detector at a sample-detector distance of 0.320 m and at a wavelength of λ = 0.154 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 0.90 mg/ml was measured at 10°C. Two successive 30 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Note: Data are of very-low quality. The experimental molecular weight cannot be obtained/confirmed from the SAXS data data. Due to the low concentration, the data contains noise in the sample—the complex of Mtb. UvrA dimer and UvrB dimer were purified by co-expressing His-tagged Mtb. UvrA and untagged Mtb.UvrB protein in BL-21 cells. The untagged UvrB forms a complex with UvrA (pre-initiation complex) and is purified. Further purification was performed by size exclusion chromatography using a superose 6 10/300 GL column, which shows the protein's equimolar and homogenous solution—the calculated molecular weight of the Mtb. UvrA2B2 complex using SEC is 343kDa.

UvrABC system protein A (UvrA)
Mol. type   Protein
Organism   Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Olig. state   Dimer
Mon. MW   106.1 kDa
 
UniProt   P9WQK7 (1-972)
Sequence   FASTA
 
UvrABC system protein B (UvrB)
Mol. type   Protein
Organism   Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Olig. state   Dimer
Mon. MW   80.4 kDa
 
UniProt   P9WFC7 (1-719)
Sequence   FASTA