SASDVJ8 – S9 peptidase form Rhizobium radiobacter (6mg/ml)

S9 peptidase form Rhizobium radiobacter

MW^experimental	109	kDa
MW^expected	74	kDa
V^Porod	137	nm³

log I(s) 2.68×10⁰ 2.68×10^-1 2.68×10^-2 2.68×10^-3

S9 peptidase form Rhizobium radiobacter small angle scattering data

s, nm^-1

Log plot Log-Log plot

ln I(s)

S9 peptidase form Rhizobium radiobacter Guinier plot

ln 2.68×10⁰ R_g: 3.5 nm 0 (3.5 nm)^-2 s²

(sR_g)²I(s)/I(0)

S9 peptidase form Rhizobium radiobacter Kratky plot

1.104 0 √3 sR_g

p(r)	R_g: 2.9 nm 0 D_max: 9.5 nm

Data validation

Experimental data range

p(r) fit to data

Metric

Value

s_min D_max / π

0.8

N_Shannon

Worse

Better

Metric

Value

p_cormap

χ²

0
0.935

Worse

Better

Fits and models

log I(s)	s, nm^-1
+3 Δ/σ -3	s, nm^-1

S9 peptidase form Rhizobium radiobacter DAMMIN model

log I(s)	s, nm^-1
+3 Δ/σ -3	s, nm^-1

S9 peptidase form Rhizobium radiobacter ALPHAFOLD model

Synchrotron SAXS data from solutions of S9 peptidase form Rhizobium radiobacter in 10 mM Tris-HCl, 135 mM NaCl, pH 8 were collected on the BL-18 beam line at INDUS-2 (Indore, India) using a MAR 345 Image Plate detector at a sample-detector distance of 2.2 m and at a wavelength of λ = 0.1033 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 6.00 mg/ml was measured at 21°C. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Likely aggregated. X-ray Exposure time = UNKNOWN. Number of frames = UNKNOWN. NCBI Reference Sequence: WP_077998848.1 (https://www.ncbi.nlm.nih.gov/protein/WP_077998848.1).

S9 peptidase form Rhizobium radiobacter (S9rr)
Mol. type		Protein
Organism		Agrobacterium radiobacter
Olig. state		Monomer
Mon. MW		73.9 kDa
Sequence		FASTA