Trypanosome histone variants H3.V and H4.V promote nucleosome plasticity in repressed chromatin

SASDX93 – T. brucei H3.V+H4.V Nucleosome Core Particle

Histone H2A
Histone H2B
Widom 601 145 bp DNA - strand 1
Widom 601 145 bp DNA - strand 2
Histone H3 variant
Histone H4
MWexperimental 207 kDa
MWexpected 197 kDa
VPorod 483 nm3
log I(s) 8.14×10-2 8.14×10-3 8.14×10-4 8.14×10-5
Histone H2A Histone H2B Widom 601 145 bp DNA - strand 1 Widom 601 145 bp DNA - strand 2 Histone H3 variant Histone H4 small angle scattering data  s, nm-1
ln I(s)
Histone H2A Histone H2B Widom 601 145 bp DNA - strand 1 Widom 601 145 bp DNA - strand 2 Histone H3 variant Histone H4 Guinier plot ln 8.15×10-2 Rg: 4.5 nm 0 (4.5 nm)-2 s2
(sRg)2I(s)/I(0)
Histone H2A Histone H2B Widom 601 145 bp DNA - strand 1 Widom 601 145 bp DNA - strand 2 Histone H3 variant Histone H4 Kratky plot 1.104 0 3 sRg
p(r)
Histone H2A Histone H2B Widom 601 145 bp DNA - strand 1 Widom 601 145 bp DNA - strand 2 Histone H3 variant Histone H4 pair distance distribution function Rg: 4.4 nm 0 Dmax: 13.1 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of T. brucei H3.V+H4.V Nucleosome Core Particle in 20 mM HEPES, 150 mM NaCl, 1 mM DTT, pH 7.5 were collected on the B21 beam line at the Diamond Light Source storage ring (Didcot, UK) using a Eiger 4M detector at a sample-detector distance of 3.7 m and at a wavelength of λ = 0.09464 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 50.00 μl sample at 2 mg/ml was injected at a 0.08 ml/min flow rate onto a GE Superdex 200 Increase 3.2/300 column at 15°C. 600 successive 3 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Histone H2A (H2A)
Mol. type   Protein
Organism   Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Olig. state   Other
Mon. MW   14.2 kDa
 
UniProt   Q57YA3 (2-134)
Sequence   FASTA
 
Histone H2B (H2B)
Mol. type   Protein
Organism   Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Olig. state   Other
Mon. MW   12.4 kDa
 
UniProt   Q389T1 (2-112)
Sequence   FASTA
 
Widom 601 145 bp DNA - strand 1
Mol. type   DNA
Olig. state   Other
Mon. MW   45.1 kDa
Sequence   FASTA
 
Widom 601 145 bp DNA - strand 2
Mol. type   DNA
Olig. state   Other
Mon. MW   44.5 kDa
Sequence   FASTA
 
Histone H3 variant (H3.V)
Mol. type   Protein
Organism   Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Olig. state   Other
Mon. MW   15.9 kDa
 
UniProt   Q387X7 (2-139)
Sequence   FASTA
 
Histone H4 (H4.V)
Mol. type   Protein
Organism   Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Olig. state   Other
Mon. MW   11.1 kDa
 
UniProt   Q587H6 (2-100)
Sequence   FASTA