Hexahistidine-tagged QseC bound to operator DNA sites

Joshua Ramsay.

SASDXJ8 – Hexahistidine-tagged Quorum sensing controller protein (QseC) bound to dual operator OL and OR DNA sites

Quorum sensing controller protein QseC
QseC Operator OL+OR DNA
MWexperimental 58 kDa
MWexpected 68 kDa
VPorod 70 nm3
log I(s) 3.29×10-3 3.29×10-4 3.29×10-5 3.29×10-6
Quorum sensing controller protein QseC QseC Operator OL+OR DNA small angle scattering data  s, nm-1
ln I(s)
Quorum sensing controller protein QseC QseC Operator OL+OR DNA Guinier plot ln 3.30×10-3 Rg: 3.2 nm 0 (3.2 nm)-2 s2
(sRg)2I(s)/I(0)
Quorum sensing controller protein QseC QseC Operator OL+OR DNA Kratky plot 1.104 0 √3 sRg
p(r)
Quorum sensing controller protein QseC QseC Operator OL+OR DNA pair distance distribution function Rg: 3.6 nm 0 Dmax: 12.6 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Quorum sensing controller protein QseC QseC Operator OL+OR DNA DAMMIN model

Synchrotron SAXS data from solutions of Hexahistidine-tagged Quorum sensing controller protein (QseC) bound to dual operator OL and OR DNA sites in 50mM Tris, 300mM NaCl, 2.5% glycerol, pH 7.4 were collected on the SAXS/WAXS beam line at the Australian Synchrotron storage ring (Melbourne, Australia) using a Pilatus 1M detector at a sample-detector distance of 1.6 m and at a wavelength of λ = 0.10332 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 60.00 μl sample at 3.5 mg/ml was injected at a 0.30 ml/min flow rate onto a GE Superdex 200 Increase 5/150 column at 25°C. 800 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Quorum sensing controller protein QseC (QseC)
Mol. type   Protein
Organism   Mesorhizobium japonicum
Olig. state   Tetramer
Mon. MW   11.1 kDa
 
UniProt   Q8KJG8 (1-70)
Sequence   FASTA
 
QseC Operator OL+OR DNA
Mol. type   DNA
Olig. state   Monomer
Mon. MW   24.1 kDa
Sequence   FASTA