Solution characterization of TraW, a regulatory protein of the F plasmid type 4 secretion system

Rodriguez C, Audette G, Structural Dynamics 13(2) (2026) DOI

SASDYU3 – N-terminal truncation mutant, of the conjugative protein of the F plasmid Type IV Secretion System, TraW.

TraW (Δ1-67)
MWexperimental 20 kDa
MWexpected 20 kDa
log I(s) 1.61×100 1.61×10-1 1.61×10-2 1.61×10-3
TraW (Δ1-67) small angle scattering data  s, nm-1
ln I(s)
TraW (Δ1-67) Guinier plot ln 1.62×100 Rg: 2.2 nm 0 (2.2 nm)-2 s2
(sRg)2I(s)/I(0)
TraW (Δ1-67) Kratky plot 1.104 0 3 sRg
p(r)
TraW (Δ1-67) pair distance distribution function Rg: 2.2 nm 0 Dmax: 8 nm

Data validation


Fits and models


log I(s)
 s, nm-1
TraW (Δ1-67) DAMMIN model

Synchrotron SAXS data from solutions of a N-terminal truncation mutant of TraW in 20 mM HEPES, 100 mM NaCl, 5% glycerol, pH 7 were collected on the BioCAT 18ID beam line at the Advanced Photon Source (APS; Argonne National Laboratory USA) using a Eiger2 XE 9M detector at a sample-detector distance of 3.7 m and at a wavelength of λ = 0.1033 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 350.00 μl sample at 13 mg/ml was injected at a 0.5 ml/min flow rate onto a GE Superdex 75 Increase 10/300 column at 22°C. 3175 successive 0.500 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

TraW (Δ1-67)
Mol. type   Protein
Organism   Escherichia coli (strain K12)
Olig. state   Monomer
Mon. MW   19.9 kDa
 
UniProt   P18472 (68-210)
Sequence   FASTA