Use of biomolecular emulator for characterizing flexible proteins by small-angle x-ray scattering.

Haitin Y, Manori B, Giladi M Protein Sci 35(6):e70646 (2026) Europe PMC

SASDZC3 – Calcium binding domains 1 and 2 from sodium-calcium exchanger 1.4, calcium-bound state

Calcium Binding Domains 1 and 2 from Sodium-Calcium Exchanger 1.4
MWexperimental 33 kDa
MWexpected 32 kDa
log I(s) 3.21×101 3.21×100 3.21×10-1 3.21×10-2
Calcium Binding Domains 1 and 2 from Sodium-Calcium Exchanger 1.4 small angle scattering data  s, nm-1
ln I(s)
Calcium Binding Domains 1 and 2 from Sodium-Calcium Exchanger 1.4 Guinier plot ln 3.22×101 Rg: 3.2 nm 0 (3.2 nm)-2 s2
(sRg)2I(s)/I(0)
Calcium Binding Domains 1 and 2 from Sodium-Calcium Exchanger 1.4 Kratky plot 1.104 0 3 sRg

Data validation


Fits and models


log I(s)
 s, nm-1
Calcium binding domains 1 and 2 from sodium-calcium exchanger 1.4, calcium-bound state Rg histogram Rg, nm
Calcium Binding Domains 1 and 2 from Sodium-Calcium Exchanger 1.4 OTHER model
Calcium Binding Domains 1 and 2 from Sodium-Calcium Exchanger 1.4 OTHER model
Calcium Binding Domains 1 and 2 from Sodium-Calcium Exchanger 1.4 OTHER model

Synchrotron SAXS data from solutions of Calcium binding domains 1 and 2 from sodium-calcium exchanger 1.4, calcium-bound state in 20 mM Tris-HCl, 100 mM KCl, 20 mM -mercaptoethanol, 10 mM CaCl2, pH 7.2 were collected on the EMBL X33 beam line at the DORIS III, DESY storage ring (Hamburg, Germany) using a Pilatus 1M-W detector at a sample-detector distance of 2.7 m and at a wavelength of λ = 0.15 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 2 and 10 mg/ml were measured at 5°C. 10 successive 2 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve.

Tags: X33
Calcium Binding Domains 1 and 2 from Sodium-Calcium Exchanger 1.4 (NCX1.4-CBD12)
Mol. type   Protein
Organism   Canis lupus familiaris
Olig. state   Monomer
Mon. MW   32.1 kDa
 
UniProt   P23685 (371-657)
Sequence   FASTA