Unravelling structural dynamics of Dengue virus 3' UTR and its impact on viral life cycle

Trushar Patel Submitted to SASBDB: 2023 Aug 31
Published in SASBDB:

SASDS39 – G4 dumbbell RNA - 3' UTR of Dengue virus

G4 dumbbell RNA - 3' untranslated region (3' UTR) Dengue virus experimental SAS data
DAMMIN model
Sample: G4 dumbbell RNA - 3' untranslated region (3' UTR) Dengue virus monomer, 31 kDa dengue virus type … RNA
Buffer: 20 mM HEPES, 100 mM KCl, 0.01 mM EDTA, pH: 7
Experiment: SAXS data collected at B21, Diamond Light Source on 2022 Sep 9
RgGuinier 3.0 nm
Dmax 9.0 nm
VolumePorod 47 nm3

SASDS49 – Dumbbell RNA - 3' UTR of Dengue virus

Dumbbell RNA - 3' untranslated region (3' UTR) Dengue virus experimental SAS data
DAMMIN model
Sample: Dumbbell RNA - 3' untranslated region (3' UTR) Dengue virus monomer, 31 kDa dengue virus type … RNA
Buffer: 20 mM HEPES, 100 mM NaCl, 5 mM MgCl2, pH: 7
Experiment: SAXS data collected at B21, Diamond Light Source on 2022 Sep 9
RgGuinier 3.6 nm
Dmax 11.7 nm
VolumePorod 44 nm3

SASDS59 – G4 dumbbell RNA mutant - 3' UTR of Dengue virus

G4 dumbbell Mut - 3' untranslated region (3' UTR) Dengue virus experimental SAS data
DAMMIN model
Sample: G4 dumbbell Mut - 3' untranslated region (3' UTR) Dengue virus dimer, 61 kDa dengue virus type … RNA
Buffer: 20 mM HEPES, 100 mM KCl, 0.01 mM EDTA, pH: 7
Experiment: SAXS data collected at B21, Diamond Light Source on 2023 Jun 30
RgGuinier 5.0 nm
Dmax 14.8 nm
VolumePorod 92 nm3