The vaccinia virus DNA polymerase structure provides insights into the mode of processivity factor binding.

Tarbouriech N, Ducournau C, Hutin S, Mas PJ, Man P, Forest E, Hart DJ, Peyrefitte CN, Burmeister WP, Iseni F
Nat Commun 8(1):1455 (2017 Nov 13)
PMID: 29129932
doi: 10.1038/s41467-017-01542-z
Submitted to SASBDB: 2017 Jun 27
Published in SASBDB:

SASDCM5 – Vaccinia virus binary E9 polymerase / DNA complex

DNA polymerase E9 exo- mutantDNA oligomer template-primer hairpin experimental SAS data
PYMOL model
Sample: DNA polymerase E9 exo- mutant monomer, 117 kDa Vaccinia virus protein
DNA oligomer template-primer hairpin monomer, 9 kDa synthetic construct DNA
Buffer: 20 mM Tris HCl, 100 mM NaCl, 4 mM DTT, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2015 Mar 12
RgGuinier 3.5 nm
Dmax 12.0 nm
VolumePorod 210 nm3

SASDCN5 – Vaccinia virus DNA polymerase

DNA polymerase E9 experimental SAS data
PYMOL model
Sample: DNA polymerase E9 monomer, 117 kDa Vaccinia virus protein
Buffer: 20 mM Tris HCl, 100 mM NaCl, 4 mM DTT, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2014 Nov 27
RgGuinier 3.9 nm
Dmax 12.0 nm
VolumePorod 202 nm3

SASDCP5 – Vaccinia virus DNA polymerase processivity factor component A20 (C-terminal fragment)

DNA polymerase processivity factor component A20 C-ter fragment experimental SAS data
DAMMIF model
Sample: DNA polymerase processivity factor component A20 C-ter fragment monomer, 17 kDa Vaccinia virus protein
Buffer: 25 mM Tris-HCl, 300 mM NaCl, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2016 Feb 5
RgGuinier 2.2 nm
Dmax 7.4 nm
VolumePorod 31 nm3