The oncogenic CCDC6-RET fusion protein is a dual ATP- and ADP-dependent kinase

Martín-Hurtado A, Contreras J, Sánchez-Wandelmer J, Zarzuela E, García F, Le Coq J, Boskovic J, Muñoz I, Gago F, Muñoz J, Isasa M, Plaza-Menacho I, Nature Communications (2026) DOI

SASDVB5 – CCDC6-RET fusion protein variant c

CCDC6-RET fusion protein variant c (K147M, Δ216-229)
MWexperimental 172 kDa
MWexpected 86 kDa
VPorod 260 nm3
log I(s) 7.45×10-2 7.45×10-3 7.45×10-4 7.45×10-5
CCDC6-RET fusion protein variant c (K147M, Δ216-229) small angle scattering data  s, nm-1
ln I(s)
CCDC6-RET fusion protein variant c (K147M, Δ216-229) Guinier plot ln 7.45×10-2 Rg: 5.5 nm 0 (5.5 nm)-2 s2
(sRg)2I(s)/I(0)
CCDC6-RET fusion protein variant c (K147M, Δ216-229) Kratky plot 1.104 0 3 sRg
Dmax: 19.5 nm

Data validation


Fits and models


log I(s)
 s, nm-1
CCDC6-RET fusion protein variant c (K147M, Δ216-229) DAMMIN model

SAXS experiments were conducted at the beamline B21 of the Diamond Light Source (Didcot, UK). CCDC6-RET∆CT (40 µL, 5 mg/mL) was injected at room temperature into a Superdex 200 Increase 3.2 column connected to an in-line Agilent 1200 HPLC system. The buffer used for the SEC column was the same protein buffer (20 mM Tris pH 7.5, 500 mM NaCl, 1 mM DTT). The eluted samples were exposed for 3s and 600 frames taken using an X-ray wavelength of 1 nm, and a sample to detector (Eiger 4M) distance of 3.7 m. The data covered a momentum transfer range of 0.032 < s < 3.4 nm-1. The frames recorded immediately before elution of the sample were subtracted from the protein scattering profiles. The Scåtter software package was used to analyze data, buffer-subtraction, scaling, merging and checking possible radiation damage of the samples. The Rg value was calculated with the Guinier approximation assuming that at very small angles s < 1.3/Rg. The particle distance distribution, Dmax, was calculated from the scattering pattern with GNOM, and shape estimation was carried out with DAMMIF/DAMMIN, all these programs included in the ATSAS package.

CCDC6-RET fusion protein variant c (K147M, Δ216-229) (CCD6C-RET deltaCT)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Dimer
Mon. MW   43.1 kDa
 
UniProt   J7M8C2 (1-402)
Sequence   FASTA