Structural and functional repurposing of picornaviral H-box 2A proteins

Marion Pichon.

SASDUZ7 – Human Parechovirus 1 2A protein dimer at neutral pH

Genome polyprotein (I918M)
MWexperimental 33 kDa
MWexpected 34 kDa
VPorod 58 nm3
log I(s) 4.66×10-2 4.66×10-3 4.66×10-4 4.66×10-5
Genome polyprotein (I918M) small angle scattering data  s, nm-1
ln I(s)
Genome polyprotein (I918M) Guinier plot ln 4.67×10-2 Rg: 2.2 nm 0 (2.2 nm)-2 s2
(sRg)2I(s)/I(0)
Genome polyprotein (I918M) Kratky plot 1.104 0 3 sRg
p(r)
Genome polyprotein (I918M) pair distance distribution function Rg: 2.3 nm 0 Dmax: 8 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Genome polyprotein (I918M) PYMOL model

log I(s)
 s, nm-1
Genome polyprotein (I918M) SREFLEX model

Synchrotron SAXS data from solutions of Human Parechovirus 1 2A protein dimer at neutral pH in 20 mM HEPES,150 mM NaCl, 2 mM TCEP, 1% v/v glycerol, pH 7.4 were collected on the EMBL P12 beam line at PETRA III (DESY; Hamburg, Germany) using a Pilatus 6M detector at a sample-detector distance of 4 m and at a wavelength of λ = 0.1549 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 40.00 μl sample at 10 mg/ml was injected at a 0.35 ml/min flow rate onto a GE Superdex 75 Increase 5/150 column at 20°C. 2880 successive 0.240 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Data were processed using the ATSAS suite. The high resolution structure of HPeV1-2A (chains A+B) theoretical scattering curve was fitted to the experimental data using rigid body and normal mode analysis (SREFLEX). CAUTION: The monomer component of the models (16 kDa) does not include all of the amino acids of the protein construct used for SAXS (17.2 kDa).

Genome polyprotein (I918M) (HPeV1-2A)
Mol. type   Protein
Organism   Human parechovirus 1 (strain Harris)
Olig. state   Dimer
Mon. MW   17.2 kDa
 
UniProt   Q66578 (777-923)
Sequence   FASTA
 
PDB ID   7ZTW