Multi-domain O-GlcNAcase structures reveal allosteric regulatory mechanisms.

Hansen SB, Bartual SG, Yuan H, Raimi OG, Gorelik A, Ferenbach AT, Lytje K, Pedersen JS, Drace T, Boesen T, van Aalten DMF, Nat Commun 16(1):8828 (2025) Europe PMC

SASDXF3 – RTX cytotoxin pro-MbxA without acylation (pro-MbxA)

RTX cytotoxin pro-MbxA without acylation
MWexperimental 105 kDa
MWexpected 100 kDa
VPorod 154 nm3
log I(s) 4.90×10-2 4.90×10-3 4.90×10-4 4.90×10-5
RTX cytotoxin pro-MbxA without acylation small angle scattering data  s, nm-1
ln I(s)
RTX cytotoxin pro-MbxA without acylation Guinier plot ln 4.91×10-2 Rg: 3.8 nm 0 (3.8 nm)-2 s2
(sRg)2I(s)/I(0)
RTX cytotoxin pro-MbxA without acylation Kratky plot 1.104 0 3 sRg
p(r)
RTX cytotoxin pro-MbxA without acylation pair distance distribution function Rg: 3.9 nm 0 Dmax: 13.4 nm

Data validation


Fits and models


log I(s)
 s, nm-1
RTX cytotoxin pro-MbxA without acylation ALPHAFOLD model

log I(s)
 s, nm-1
RTX cytotoxin pro-MbxA without acylation SREFLEX model

log I(s)
 s, nm-1
RTX cytotoxin pro-MbxA without acylation GASBOR model

Synchrotron SAXS data from solutions of RTX cytotoxin pro-MbxA without acylation (pro-MbxA) in 50 mM Tris, 100 mM NaCl, 10mM CaCl2, pH 7.8 were collected on the EMBL P12 beam line at the PETRA III storage ring (DESY; Hamburg, Germany) using a Pilatus 6M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.155 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 100.00 μl sample at 5.3 mg/ml was injected at a 0.50 ml/min flow rate onto a GE Superose 6 Increase 10/300 column at 20°C. 3000 successive 0.995 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

RTX cytotoxin pro-MbxA without acylation (pro-MbxA)
Mol. type   Protein
Organism   Moraxella bovis
Olig. state   Monomer
Mon. MW   99.7 kDa
 
UniProt   Q93GI2
Sequence   FASTA