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108 hits found for Hopkins

SASDMB6 – 6L92

WNT promoter GQ hybrid form experimental SAS data
CHIMERA model
Sample: WNT promoter GQ hybrid form monomer, 7 kDa synthetic construct DNA
Buffer: 6 mM Na2HPO4, 2 mM NaH2PO4, 1 mM Na2EDTA, 185 mM KCl, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Nov 21
Long promoter sequences form higher-order G-quadruplexes: an integrative structural biology study of c-Myc, k-Ras and c-Kit promoter sequences. Nucleic Acids Res (2022)
...Hopkins JB, Chaires JB, Trent JO
RgGuinier 1.2 nm
Dmax 3.9 nm
VolumePorod 8 nm3

SASDMC6 – 2KQG

cKit promoter GQ parallel experimental SAS data
CHIMERA model
Sample: cKit promoter GQ parallel monomer, 7 kDa synthetic construct DNA
Buffer: 6 mM Na2HPO4, 2 mM NaH2PO4, 1 mM Na2EDTA, 185 mM KCl, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Nov 20
Long promoter sequences form higher-order G-quadruplexes: an integrative structural biology study of c-Myc, k-Ras and c-Kit promoter sequences. Nucleic Acids Res (2022)
...Hopkins JB, Chaires JB, Trent JO
RgGuinier 1.6 nm
Dmax 3.2 nm
VolumePorod 14 nm3

SASDMD6 – 2LBY

cMyc promoter GQ parallel experimental SAS data
CHIMERA model
Sample: cMyc promoter GQ parallel monomer, 6 kDa synthetic construct DNA
Buffer: 6 mM Na2HPO4, 2 mM NaH2PO4, 1 mM Na2EDTA, 185 mM KCl, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Nov 20
Long promoter sequences form higher-order G-quadruplexes: an integrative structural biology study of c-Myc, k-Ras and c-Kit promoter sequences. Nucleic Acids Res (2022)
...Hopkins JB, Chaires JB, Trent JO
RgGuinier 1.2 nm
Dmax 3.9 nm
VolumePorod 7 nm3

SASDME6 – 6NEB

cMyc promoter GQ 1:6:1 loop parallel experimental SAS data
CHIMERA model
Sample: cMyc promoter GQ 1:6:1 loop parallel monomer, 9 kDa synthetic construct DNA
Buffer: 6 mM Na2HPO4, 2 mM NaH2PO4, 1 mM Na2EDTA, 185 mM KCl, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Nov 20
Long promoter sequences form higher-order G-quadruplexes: an integrative structural biology study of c-Myc, k-Ras and c-Kit promoter sequences. Nucleic Acids Res (2022)
...Hopkins JB, Chaires JB, Trent JO
RgGuinier 1.4 nm
Dmax 4.5 nm
VolumePorod 10 nm3

SASDMF6 – 1XAV

cMyc promoter modified GQ parallel experimental SAS data
CHIMERA model
Sample: cMyc promoter modified GQ parallel monomer, 7 kDa synthetic construct DNA
Buffer: 6 mM Na2HPO4, 2 mM NaH2PO4, 1 mM Na2EDTA, 185 mM KCl, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Aug 11
Long promoter sequences form higher-order G-quadruplexes: an integrative structural biology study of c-Myc, k-Ras and c-Kit promoter sequences. Nucleic Acids Res (2022)
...Hopkins JB, Chaires JB, Trent JO
RgGuinier 1.3 nm
Dmax 4.1 nm
VolumePorod 9 nm3

SASDM66 – 2KZE

TERT promoter G-quadruplex parallel experimental SAS data
CHIMERA model
Sample: TERT promoter G-quadruplex parallel monomer, 6 kDa synthetic construct DNA
Buffer: 6 mM Na2HPO4, 2 mM NaH2PO4, 1 mM Na2EDTA, 185 mM KCl, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2021 Aug 11
Long promoter sequences form higher-order G-quadruplexes: an integrative structural biology study of c-Myc, k-Ras and c-Kit promoter sequences. Nucleic Acids Res (2022)
...Hopkins JB, Chaires JB, Trent JO
RgGuinier 1.3 nm
Dmax 4.2 nm
VolumePorod 8 nm3

SASDMG6 – 5CMX

two-tetrad antiparallel GQ with duplex junction experimental SAS data
CHIMERA model
Sample: two-tetrad antiparallel GQ with duplex junction monomer, 10 kDa synthetic construct DNA
Buffer: 6 mM Na2HPO4, 2 mM NaH2PO4, 1 mM Na2EDTA, 185 mM KCl, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Oct 3
Long promoter sequences form higher-order G-quadruplexes: an integrative structural biology study of c-Myc, k-Ras and c-Kit promoter sequences. Nucleic Acids Res (2022)
...Hopkins JB, Chaires JB, Trent JO
RgGuinier 1.5 nm
Dmax 5.2 nm
VolumePorod 12 nm3

SASDMH6 – 2M27

VEGF promoter GQ parallel experimental SAS data
CHIMERA model
Sample: VEGF promoter GQ parallel monomer, 7 kDa synthetic construct DNA
Buffer: 6 mM Na2HPO4, 2 mM NaH2PO4, 1 mM Na2EDTA, 185 mM KCl, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Nov 20
Long promoter sequences form higher-order G-quadruplexes: an integrative structural biology study of c-Myc, k-Ras and c-Kit promoter sequences. Nucleic Acids Res (2022)
...Hopkins JB, Chaires JB, Trent JO
RgGuinier 1.3 nm
Dmax 3.8 nm
VolumePorod 8 nm3