Small Angle Scattering Biological Data Bank SASBDB

Browse by DISSEMINATION: Published

SASDR26 – Arabidopsis thaliana Toc75 Potra domains bound to synthetic antigen binding fragment sAB tc5

Protein TOC75-3, chloroplasticsynthetic antigen binding fragment tc5 experimental SAS data

Protein TOC75-3, chloroplastic synthetic antigen binding fragment tc5 Kratky plot

Sample:	Protein TOC75-3, chloroplastic monomer, 35 kDa Arabidopsis thaliana protein Synthetic antigen binding fragment tc5 monomer, 49 kDa synthetic construct protein
Buffer:	phosphate buffered saline, pH: 7.5
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Nov 23

Characterization of synthetic antigen binding fragments targeting Toc75 for the isolation of TOC in A. thaliana and P. sativum Structure (2023)
Srinivasan K, Erramilli S, Chakravarthy S, Gonzalez A, Kossiakoff A, Noinaj N

R_g^Guinier	3.8	nm
D_max	13.5	nm
Volume^Porod	130	nm³

SASDR36 – Pisum sativum Toc75 Potra domains

Protein TOC75, chloroplastic experimental SAS data

Protein TOC75, chloroplastic Kratky plot

Sample:	Protein TOC75, chloroplastic monomer, 32 kDa Pisum sativum protein
Buffer:	phosphate buffered saline, pH: 7.5
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Nov 23

R_g^Guinier	2.9	nm
D_max	11.0	nm
Volume^Porod	60	nm³

SASDR46 – Pisum sativum Toc75 Potra domains bound to synthetic antigen binding fragment sAB ax9

Protein TOC75, chloroplasticsynthetic antigen binding fragment ax9 experimental SAS data

Protein TOC75, chloroplastic synthetic antigen binding fragment ax9 Kratky plot

Sample:	Protein TOC75, chloroplastic monomer, 32 kDa Pisum sativum protein Synthetic antigen binding fragment ax9 monomer, 49 kDa synthetic construct protein
Buffer:	phosphate buffered saline, pH: 7.5
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Nov 23

R_g^Guinier	3.8	nm
D_max	13.5	nm
Volume^Porod	123	nm³

SASDR56 – Pisum sativum Toc75 Potra domains bound to synthetic antigen binding fragment sAB ax14

Protein TOC75, chloroplasticsynthetic antigen binding fragment ax14 experimental SAS data

Protein TOC75, chloroplastic synthetic antigen binding fragment ax14 Kratky plot

Sample:	Protein TOC75, chloroplastic monomer, 32 kDa Pisum sativum protein Synthetic antigen binding fragment ax14 monomer, 48 kDa synthetic construct protein
Buffer:	phosphate buffered saline, pH: 7.5
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Nov 23

R_g^Guinier	4.1	nm
D_max	15.5	nm
Volume^Porod	150	nm³

SASDR66 – Pisum sativum Toc75 Potra domains bound to synthetic antigen binding fragment sAB ax15

Protein TOC75, chloroplasticsynthetic antigen binding fragment ax15 experimental SAS data

Protein TOC75, chloroplastic synthetic antigen binding fragment ax15 Kratky plot

Sample:	Protein TOC75, chloroplastic monomer, 32 kDa Pisum sativum protein Synthetic antigen binding fragment ax15 monomer, 48 kDa synthetic construct protein
Buffer:	phosphate buffered saline, pH: 7.5
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Nov 23

R_g^Guinier	3.8	nm
D_max	14.0	nm
Volume^Porod	123	nm³

SASDR76 – Pisum sativum Toc75 Potra domains bound to synthetic antigen binding fragment sAB ax17

Protein TOC75, chloroplasticsynthetic antigen binding fragment ax17 experimental SAS data

Protein TOC75, chloroplastic synthetic antigen binding fragment ax17 Kratky plot

Sample:	Protein TOC75, chloroplastic monomer, 32 kDa Pisum sativum protein Synthetic antigen binding fragment ax17 monomer, 49 kDa synthetic construct protein
Buffer:	phosphate buffered saline, pH: 7.5
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Nov 23

R_g^Guinier	3.4	nm
D_max	12.0	nm
Volume^Porod	118	nm³

SASDQB9 – YdaT_toxin domain-containing protein

YdaT_toxin domain-containing protein experimental SAS data

Sample:	YdaT_toxin domain-containing protein tetramer, 74 kDa Escherichia coli O157:H7 protein
Buffer:	20 mM Tris-HCl, 200 mM NaCl, pH: 8
Experiment:	SAXS data collected at SWING, SOLEIL on 2022 Apr 16

Structural basis of DNA binding by YdaT, a functional equivalent of the CII repressor in the cryptic prophage CP-933P from Escherichia coli O157:H7 Acta Crystallographica Section D Structural Biology 79(3):245-258 (2023)
Prolič-Kalinšek M, Volkov A, Hadži S, Van Dyck J, Bervoets I, Charlier D, Loris R

R_g^Guinier	3.5	nm
D_max	12.0	nm
Volume^Porod	130	nm³

SASDQC9 – Mutant YdaT_toxin domain-containing protein (L111N/F118R)

YdaT_toxin domain-containing protein (mutant: L111N, F118R) experimental SAS data

Sample:	YdaT_toxin domain-containing protein (mutant: L111N, F118R) monomer, 18 kDa Escherichia coli O157:H7 protein
Buffer:	20 mM Tris-HCl, 200 mM NaCl, pH: 8
Experiment:	SAXS data collected at SWING, SOLEIL on 2021 Apr 14

R_g^Guinier	2.4	nm
D_max	8.2	nm
Volume^Porod	32	nm³

SASDQD9 – N-terminal domain of YdaT_toxin domain-containing protein

Sample:	YdaT_toxin domain-containing protein monomer, 13 kDa Escherichia coli O157:H7 protein
Buffer:	20 mM Tris-HCl, 200 mM NaCl, pH: 8
Experiment:	SAXS data collected at SWING, SOLEIL on 2022 Apr 16

R_g^Guinier	1.7	nm
D_max	5.7	nm
Volume^Porod	29	nm³

SASDQE9 – YdaT_toxin domain-containing protein bound to 30 base pair dsDNA

YdaT_toxin domain-containing proteinOm 30 base pair dsDNA experimental SAS data

Sample:	YdaT_toxin domain-containing protein tetramer, 74 kDa Escherichia coli O157:H7 protein Om 30 base pair dsDNA dimer, 37 kDa DNA
Buffer:	20 mM Tris-HCl, 200 mM NaCl, pH: 8
Experiment:	SAXS data collected at BM29, ESRF on 2021 Apr 14

R_g^Guinier	4.2	nm
D_max	12.8	nm
Volume^Porod	190	nm³

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