Small Angle Scattering Biological Data Bank SASBDB

Browse by MACROMOLECULE type: protein

SASDWE5 – Shewanella benthica hemoglobin Y108A 150 MPa

Group 1 truncated hemoglobin (C51S, C71S, Y108A) experimental SAS data

Group 1 truncated hemoglobin (C51S, C71S, Y108A) Kratky plot

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

Extremophilic hemoglobins: The structure of Shewanella benthica truncated hemoglobin N Journal of Biological Chemistry :108223 (2025)
Martinez Grundman J, Schultz T, Schlessman J, Johnson E, Gillilan R, Lecomte J

R_g^Guinier	1.6	nm
D_max	6.0	nm
Volume^Porod	21	nm³

SASDWF5 – Shewanella benthica hemoglobin Y108A 200 MPa

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

R_g^Guinier	1.8	nm
D_max	8.8	nm
Volume^Porod	24	nm³

SASDWG5 – Shewanella benthica hemoglobin Y108A 250 MPa

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

R_g^Guinier	2.1	nm
D_max	9.5	nm
Volume^Porod	25	nm³

SASDWH5 – Shewanella benthica hemoglobin Y108A 300 MPa

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

R_g^Guinier	2.2	nm
D_max	12.0	nm
Volume^Porod	26	nm³

SASDWJ5 – Shewanella benthica hemoglobin Y108A 350 MPa

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

R_g^Guinier	2.3	nm
D_max	11.0	nm
Volume^Porod	31	nm³

SASDV64 – Serine hydrolase FphH with short chain esterase activity (Apo FphH)

Alpha/beta fold hydrolase experimental SAS data

Sample:	Alpha/beta fold hydrolase monomer, 28 kDa Staphylococcus aureus protein
Buffer:	100 mM NaCl, 10 mM HEPES, pH: 7.6
Experiment:	SAXS data collected at BioSAXS, Australian Synchrotron on 2024 Apr 11

Similar but Distinct—Biochemical Characterization of the Staphylococcus aureus Serine Hydrolases FphH and FphI Proteins: Structure, Function, and Bioinformatics (2024)
Fellner M, Randall G, Bitac I, Warrender A, Sethi A, Jelinek R, Kass I

R_g^Guinier	2.1	nm
D_max	6.5	nm
Volume^Porod	41	nm³

SASDSZ5 – DNA binding domain of PALB2 (partner and localizer of BRCA2) in 500 mM NaCl

Partner and localizer of BRCA2 experimental SAS data

DNA binding domain of PALB2 (partner and localizer of BRCA2) in 500 mM NaCl Rg histogram

Sample:	Partner and localizer of BRCA2 dimer, 46 kDa Homo sapiens protein
Buffer:	50 mM HEPES, 500 mM NaCl, 0.5 mM TCEP, pH: 7.4
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Nov 11

The strand exchange domain of tumor suppressor PALB2 is intrinsically disordered and promotes oligomerization-dependent DNA compaction. iScience 27(12):111259 (2024)
Kyriukha Y, Watkins MB, Redington JM, Chintalapati N, Ganti A, Dastvan R, Uversky VN, Hopkins JB, Pozzi N, Korolev S

R_g^Guinier	5.5	nm
D_max	25.4	nm
Volume^Porod	171	nm³

SASDS26 – DNA binding domain of PALB2 (partner and localizer of BRCA2) in 160 mM NaCl

DNA binding domain of PALB2 (partner and localizer of BRCA2) in 160 mM NaCl Rg histogram

Sample:	Partner and localizer of BRCA2 dimer, 46 kDa Homo sapiens protein
Buffer:	50 mM HEPES, 160 mM NaCl, 0.5 mM TCEP, pH: 7.4
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Nov 11

R_g^Guinier	4.7	nm
D_max	21.3	nm
Volume^Porod	197	nm³

SASDVQ7 – PABL2 (Partner and localizer of BRCA2) L24A mutant

Partner and localizer of BRCA2 (L24A) experimental SAS data

PABL2 (Partner and localizer of BRCA2) L24A mutant Rg histogram

Sample:	Partner and localizer of BRCA2 (L24A) monomer, 23 kDa Homo sapiens protein
Buffer:	20 mM HEPES, 160 mM NaCl, 0.5 mM TCEP pH 7.5, pH: 7.5
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Dec 9

R_g^Guinier	5.2	nm
D_max	21.6	nm
Volume^Porod	127	nm³

SASDVR7 – PABL2 (Partner and localizer of BRCA2) incubated with dT50 (DNA)

Partner and localizer of BRCA2 Kratky plot

Sample:	Partner and localizer of BRCA2 dimer, 46 kDa Homo sapiens protein
Buffer:	20 mM HEPES, 160 mM NaCl, 0.5 mM TCEP pH 7.5, pH: 7.5
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Dec 9

R_g^Guinier	4.6	nm
D_max	17.6	nm
Volume^Porod	236	nm³

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