Browse by MACROMOLECULE type: protein

SASDMV7 – The tetramer of splicing factor, proline- and glutamine-rich and Non-POU domain-containing octamer-binding protein (SFPQ214-598(R542C)/NONO53-312)

Splicing factor, proline- and glutamine-richNon-POU domain-containing octamer-binding protein experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Splicing factor, proline- and glutamine-rich dimer, 153 kDa Homo sapiens protein
Non-POU domain-containing octamer-binding protein dimer, 60 kDa Homo sapiens protein
Buffer: 20 mM Tris pH 7.5, 250 mM NaCl, pH: 7.5
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2019 Jun 18
Structural plasticity of the coiled-coil interactions in human SFPQ. Nucleic Acids Res (2024)
Koning HJ, Lai JY, Marshall AC, Stroeher E, Monahan G, Pullakhandam A, Knott GJ, Ryan TM, Fox AH, Whitten A, Lee M, Bond CS
RgGuinier 5.5 nm
Dmax 20.4 nm
VolumePorod 304 nm3

SASDMW7 – Concentration dependent dimer-tetramer transition of splicing factor, proline- and glutamine-rich with Non-POU domain-containing octamer-binding protein (SFPQ276-565/NONO53-312)

Splicing factor, proline- and glutamine-rich (276-565)Non-POU domain-containing octamer-binding protein (53-312) experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Splicing factor, proline- and glutamine-rich (276-565) monomer, 34 kDa Homo sapiens protein
Non-POU domain-containing octamer-binding protein (53-312) monomer, 30 kDa Homo sapiens protein
Buffer: 20 mM Tris pH 7.5, 250 mM NaCl, pH: 7.5
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2015 Apr 28
Structural plasticity of the coiled-coil interactions in human SFPQ. Nucleic Acids Res (2024)
Koning HJ, Lai JY, Marshall AC, Stroeher E, Monahan G, Pullakhandam A, Knott GJ, Ryan TM, Fox AH, Whitten A, Lee M, Bond CS
RgGuinier 3.0 nm
Dmax 12.7 nm
VolumePorod 102 nm3

SASDMW8 – The disulphide-linked tetramer of splicing factor, proline- and glutamine-rich and Non-POU domain-containing octamer-binding protein (SFPQ276-598(R542C)/NONO53-312) at 0.78mg/ml

Non-POU domain-containing octamer-binding proteinSplicing factor, proline- and glutamine-rich SFPQ276-598(R542C)/NONO53-312 dimer) experimental SAS data
DAMMIF model
Sample: Non-POU domain-containing octamer-binding protein dimer, 60 kDa Homo sapiens protein
Splicing factor, proline- and glutamine-rich SFPQ276-598(R542C)/NONO53-312 dimer) dimer, 76 kDa Homo sapiens protein
Buffer: 20 mM Tris pH 7.5, 250 mM NaCl, pH: 7.5
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2015 Apr 28
Structural plasticity of the coiled-coil interactions in human SFPQ. Nucleic Acids Res (2024)
Koning HJ, Lai JY, Marshall AC, Stroeher E, Monahan G, Pullakhandam A, Knott GJ, Ryan TM, Fox AH, Whitten A, Lee M, Bond CS
RgGuinier 5.2 nm
Dmax 21.0 nm
VolumePorod 257 nm3

SASDVG6 – 2-nitroimidazole nitrohydrolase

2-nitroimidazole nitrohydrolase (T2I, G14D, K73R) experimental SAS data
REFMAC model
Sample: 2-nitroimidazole nitrohydrolase (T2I, G14D, K73R) hexamer, 258 kDa Mycobacterium sp. (strain … protein
Buffer: 25 mM Tris-HCl, 150 mM NaCl, 5% (v/v) glycerol, pH: 7.6
Experiment: SAXS data collected at BioSAXS, Australian Synchrotron on 2024 Aug 6
Structural insights into the enzymatic breakdown of azomycin-derived antibiotics by 2-nitroimdazole hydrolase (NnhA). Commun Biol 7(1):1676 (2024)
Ahmed FH, Liu JW, Royan S, Warden AC, Esquirol L, Pandey G, Newman J, Scott C, Peat TS
RgGuinier 4.6 nm
Dmax 12.6 nm
VolumePorod 363 nm3

SASDQT8 – Dark-state LOV-activated diguanylate cyclase

Sensor domain-containing diguanylate cyclase experimental SAS data
DAMMIN model
Sample: Sensor domain-containing diguanylate cyclase dimer, 72 kDa Methylotenera sp. protein
Buffer: 10 mM Tris, 50 mM NaCl, 2 mM MgCl2, 3% glycerol, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2022 Apr 24
LOV-activated diguanylate cyclase
Ursula Vide
RgGuinier 3.4 nm
Dmax 15.0 nm
VolumePorod 128 nm3

SASDQU8 – Light-state LOV-activated diguanylate cyclase

Sensor domain-containing diguanylate cyclase experimental SAS data
DAMMIN model
Sample: Sensor domain-containing diguanylate cyclase dimer, 72 kDa Methylotenera sp. protein
Buffer: 10 mM Tris, 50 mM NaCl, 2 mM MgCl2, 3% glycerol, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2022 Apr 24
LOV-activated diguanylate cyclase
RgGuinier 5.2 nm
Dmax 18.0 nm
VolumePorod 159 nm3

SASDQJ7 – Alpha Synuclein at 283 K and concentration of 8 mg/ml

Human alpha-synuclein experimental SAS data
ALPHAFOLD model
Sample: Human alpha-synuclein monomer, 14 kDa Homo sapiens protein
Buffer: 10 mM HEPES, 50 mM NaCl, pH: 7.4
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR - Institute of Microbial Technology (IMTech) on 2015 Mar 18
Visualizing gaussian-chain like structural models of human α-synuclein in monomeric pre-fibrillar state: Solution SAXS data and modeling analysis. Int J Biol Macromol 288:138614 (2024)
Dey M, Gupta A, Badmalia MD, Ashish, Sharma D
RgGuinier 4.7 nm
Dmax 17.6 nm
VolumePorod 81 nm3

SASDQK7 – Alpha Synuclein at 283 K and concentration of 3.8 mg/ml

Human alpha-synuclein experimental SAS data
Human alpha-synuclein Kratky plot
Sample: Human alpha-synuclein monomer, 14 kDa Homo sapiens protein
Buffer: 10 mM HEPES, 50 mM NaCl, pH: 7.4
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR - Institute of Microbial Technology (IMTech) on 2015 Mar 18
Visualizing gaussian-chain like structural models of human α-synuclein in monomeric pre-fibrillar state: Solution SAXS data and modeling analysis. Int J Biol Macromol 288:138614 (2024)
Dey M, Gupta A, Badmalia MD, Ashish, Sharma D
RgGuinier 4.7 nm
Dmax 18.0 nm
VolumePorod 76 nm3

SASDQV8 – Na/Ca-exchange protein - CALX1.2 CBD12 domain in the Ca2+-free (Apo) state

Na/Ca-exchange protein, isoform D experimental SAS data
Na/Ca-exchange protein, isoform D Kratky plot
Sample: Na/Ca-exchange protein, isoform D monomer, 31 kDa Drosophila melanogaster protein
Buffer: 20 mM TRIS, 200 mM NaCl, 1% v/v glycerol, 0.03% w/v NaN3, 1 mM β-mercaptoethanol, 2 mM EDTA, pH: 7.5
Experiment: SAXS data collected at Xenocs Xeuss, Institute of Physics, University of São Paulo on 2018 Mar 8
SAXS characterisation of CALX1.2 CBD12 construct
Roberto Kopke Salinas
RgGuinier 2.6 nm
Dmax 10.0 nm
VolumePorod 48 nm3

SASDQW8 – Na/Ca-exchange protein - CALX1.2 CBD12 domain in the Ca2+-bound state

Na/Ca-exchange protein, isoform D experimental SAS data
Na/Ca-exchange protein, isoform D Kratky plot
Sample: Na/Ca-exchange protein, isoform D monomer, 31 kDa Drosophila melanogaster protein
Buffer: 20 mM TRIS, 200 mM NaCl, 1% v/v glycerol, 0.03% w/v NaN3, 1 mM β-mercaptoethanol, 50 mM CaCl2, pH: 7.5
Experiment: SAXS data collected at Xenocs Xeuss, Institute of Physics, University of São Paulo on 2018 Mar 8
SAXS characterisation of CALX1.2 CBD12 construct
RgGuinier 2.7 nm
Dmax 9.9 nm
VolumePorod 32 nm3