Browse by MACROMOLECULE type: protein

SASDCS5 – SAXS on intact Doryteuthis squid lens 60% layer

S-crystallin, Q25367_DOROP experimental SAS data
DAMMIF model
Sample: S-crystallin, Q25367_DOROP dimer, 55 kDa Doryteuthis pealeii protein
Buffer: Tissue fluid, pH: 7
Experiment: SAXS data collected at X9A, National Synchrotron Light Source (NSLS) on 2014 Jul 17
Eye patches: Protein assembly of index-gradient squid lenses. Science 357(6351):564-569 (2017)
Cai J, Townsend JP, Dodson TC, Heiney PA, Sweeney AM

SASDCT5 – SAXS on intact Doryteuthis squid lens 40% layer

S-crystallin, Q25367_DOROP experimental SAS data
DAMMIF model
Sample: S-crystallin, Q25367_DOROP dimer, 55 kDa Doryteuthis pealeii protein
Buffer: Tissue fluid, pH: 7
Experiment: SAXS data collected at X9A, National Synchrotron Light Source (NSLS) on 2014 Jul 17
Eye patches: Protein assembly of index-gradient squid lenses. Science 357(6351):564-569 (2017)
Cai J, Townsend JP, Dodson TC, Heiney PA, Sweeney AM

SASDCU5 – SAXS dilution series on ground Doryteuthis squid lens 100% layer

S-crystallin, Q25367_DOROP experimental SAS data
S-crystallin, Q25367_DOROP Kratky plot
Sample: S-crystallin, Q25367_DOROP dimer, 55 kDa Doryteuthis pealeii protein
Buffer: PBS, phosphate buffered saline, pH: 7
Experiment: SAXS data collected at X9A, National Synchrotron Light Source (NSLS) on 2013 Nov 12
Eye patches: Protein assembly of index-gradient squid lenses. Science 357(6351):564-569 (2017)
Cai J, Townsend JP, Dodson TC, Heiney PA, Sweeney AM
RgGuinier 2.4 nm

SASDCW4 – Bovine β Cardiac Myosin S1 fragment (Myosin-7) MgADP.VO4+OM

Bovine β Cardiac Myosin S1 fragment experimental SAS data
Bovine β Cardiac Myosin S1 fragment Kratky plot
Sample: Bovine β Cardiac Myosin S1 fragment monomer, 117 kDa Bos taurus protein
Buffer: 10 mM HEPES, 50 mM NaCl, 1 mM NaN3, 2.5 mM MgCl2, 2 mM ADP, 1 mM TCEP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2016 Mar 1
Mechanistic and structural basis for activation of cardiac myosin force production by omecamtiv mecarbil. Nat Commun 8(1):190 (2017)
Planelles-Herrero VJ, Hartman JJ, Robert-Paganin J, Malik FI, Houdusse A
RgGuinier 3.6 nm
Dmax 12.6 nm
VolumePorod 162 nm3

SASDCX4 – Bovine β Cardiac Myosin S1 fragment (Myosin-7) MgADP+OM

Bovine β Cardiac Myosin S1 fragment experimental SAS data
Bovine β Cardiac Myosin S1 fragment Kratky plot
Sample: Bovine β Cardiac Myosin S1 fragment monomer, 117 kDa Bos taurus protein
Buffer: 10 mM HEPES, 50 mM NaCl, 1 mM NaN3, 2.5 mM MgCl2, 2 mM ADP, 1 mM TCEP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2016 Mar 1
Mechanistic and structural basis for activation of cardiac myosin force production by omecamtiv mecarbil. Nat Commun 8(1):190 (2017)
Planelles-Herrero VJ, Hartman JJ, Robert-Paganin J, Malik FI, Houdusse A
RgGuinier 4.0 nm
Dmax 11.5 nm
VolumePorod 161 nm3

SASDCL2 – Tandem CBD from Clostridium histolyticum ColG collagenase at pCa 3

Class1 collagenase experimental SAS data
DAMMIF model
Sample: Class1 collagenase monomer, 27 kDa Hathewaya histolytica protein
Buffer: 10 mM HEPES 100 mM NaCL, 2% glycerol, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2015 Sep 14
Structural characterization of bacterial collagenases University of Arkansas PhD thesis 2431 (2017)
Bauer R
RgGuinier 2.4 nm
Dmax 7.5 nm
VolumePorod 36 nm3

SASDCM2 – Tandem CBD from Clostridium histolyticum ColG collagenase at pCa 4

Class1 collagenase collagen-binding domain experimental SAS data
DAMMIF model
Sample: Class1 collagenase collagen-binding domain monomer, 27 kDa Hathewaya histolytica protein
Buffer: 10 mM HEPES 100 mM NaCL, 2% glycerol, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2015 Sep 14
Structural characterization of bacterial collagenases University of Arkansas PhD thesis 2431 (2017)
Bauer R
RgGuinier 2.4 nm
Dmax 9.8 nm
VolumePorod 33 nm3

SASDCN2 – Tandem CBD from Clostridium histolyticum ColG collagenase at pCa 5

Class1 collagenase experimental SAS data
DAMMIF model
Sample: Class1 collagenase monomer, 27 kDa Hathewaya histolytica protein
Buffer: 10 mM HEPES 100 mM NaCL, 2% glycerol, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2016 Sep 14
Structural characterization of bacterial collagenases University of Arkansas PhD thesis 2431 (2017)
Bauer R
RgGuinier 2.5 nm
Dmax 9.4 nm
VolumePorod 36 nm3

SASDCP2 – Tandem CBD from Clostridium histolyticum ColG collagenase at pCa 6

Class1 collagenase experimental SAS data
DAMMIF model
Sample: Class1 collagenase monomer, 27 kDa Hathewaya histolytica protein
Buffer: 10 mM HEPES 100 mM NaCL, 2% glycerol, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2015 Sep 14
Structural characterization of bacterial collagenases University of Arkansas PhD thesis 2431 (2017)
Bauer R
RgGuinier 2.6 nm
Dmax 12.8 nm
VolumePorod 33 nm3

SASDCD3 – Nucleolysin TIA-1 isoform p40 (LPQTG containing construct for sortase mediated protein ligation)

Nucleolysin TIA-1 isoform p40 experimental SAS data
Nucleolysin TIA-1 isoform p40 Kratky plot
Sample: Nucleolysin TIA-1 isoform p40 monomer, 31 kDa Homo sapiens protein
Buffer: 10 mM Potassium Phosphate 50 mM NaCl 10 mM DTT, pH: 6
Experiment: SAXS data collected at Rigaku BioSAXS-1000, SFB 1035, Technische Universität München on 2015 Dec 1
Segmental, Domain-Selective Perdeuteration and Small-Angle Neutron Scattering for Structural Analysis of Multi-Domain Proteins. Angew Chem Int Ed Engl 56(32):9322-9325 (2017)
Sonntag M, Jagtap PKA, Simon B, Appavou MS, Geerlof A, Stehle R, Gabel F, Hennig J, Sattler M
RgGuinier 2.7 nm
Dmax 10.3 nm
VolumePorod 38 nm3