Browse by ORGANISM: other species

SASDLJ8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.320)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
ROSETTA model
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial, 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M
RgGuinier 2.0 nm

SASDLK8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.330)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
ROSETTA model
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial, 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M
RgGuinier 2.0 nm

SASDLL8 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.5 : 10 min)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial, 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M
RgGuinier 5.7 nm
Dmax 18.9 nm

SASDMG3 – Tetrameric zinc-finger associated domain of Drosophila Pita protein

LD15650p (Pita, isoform A) experimental SAS data
OTHER model
Sample: LD15650p (Pita, isoform A) tetramer, 52 kDa Drosophila melanogaster protein
Buffer: 20 mM Tris, 100 mM NaCl, 5 mM DTT, pH: 7.4
Experiment: SAXS data collected at BM29, ESRF on 2018 Jul 8
Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure (2022)
Bonchuk AN, Boyko KM, Nikolaeva AY, Burtseva AD, Popov VO, Georgiev PG
RgGuinier 2.4 nm
Dmax 7.6 nm
VolumePorod 62 nm3

SASDMH3 – Zinc-finger associated domain of Drosophila Pita protein L45A

LD15650p (Pita, isoform A; L45A) experimental SAS data
OTHER model
Sample: LD15650p (Pita, isoform A; L45A) dimer, 26 kDa Drosophila melanogaster protein
Buffer: 20 mM Tris, 100 mM NaCl, 5 mM DTT, pH: 7.4
Experiment: SAXS data collected at BM29, ESRF on 2018 Dec 17
Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure (2022)
Bonchuk AN, Boyko KM, Nikolaeva AY, Burtseva AD, Popov VO, Georgiev PG
RgGuinier 2.3 nm
Dmax 9.5 nm
VolumePorod 35 nm3

SASDMJ3 – Zinc-finger-associated domain from Drosophila Motif 1 binding protein (M1BP)

LD30467p (Motif 1 binding protein) experimental SAS data
OTHER model
Sample: LD30467p (Motif 1 binding protein) dimer, 22 kDa Drosophila melanogaster protein
Buffer: 20 mM Bis-Tris-Propane, 100 mM NaCl, 5 mM DTT, pH: 8.5
Experiment: SAXS data collected at BM29, ESRF on 2018 Dec 17
Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure (2022)
Bonchuk AN, Boyko KM, Nikolaeva AY, Burtseva AD, Popov VO, Georgiev PG
RgGuinier 2.3 nm
Dmax 9.1 nm
VolumePorod 33 nm3

SASDNY7 – DNA-binding protein from starved cells: DgrDpsWT in 50 mM MOPS, 50 mM NaCl pH 7.0

DNA protection during starvation, DPS (Ferritin superfamily) experimental SAS data
GASBOR model
Sample: DNA protection during starvation, DPS (Ferritin superfamily) dodecamer, 270 kDa Deinococcus grandis protein
Buffer: 50 mM MOPS-NaOH, 50 mM NaCl, pH: 7
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22
The Conformation of the N-Terminal Tails of Deinococcus grandis Dps Is Modulated by the Ionic Strength International Journal of Molecular Sciences 23(9):4871 (2022)
Guerra J, Blanchet C, Vieira B, Almeida A, Waerenborgh J, Jones N, Hoffmann S, Tavares P, Pereira A
RgGuinier 4.4 nm
Dmax 16.1 nm
VolumePorod 409 nm3

SASDNZ7 – DNA-binding protein from starved cells: DgrDpsWT in 50 mM MOPS, 80 mM NaCl pH 7.0

DNA protection during starvation, DPS (Ferritin superfamily) experimental SAS data
GASBOR model
Sample: DNA protection during starvation, DPS (Ferritin superfamily) dodecamer, 270 kDa Deinococcus grandis protein
Buffer: 50 mM MOPS-NaOH, 80 mM NaCl, pH: 7
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22
The Conformation of the N-Terminal Tails of Deinococcus grandis Dps Is Modulated by the Ionic Strength International Journal of Molecular Sciences 23(9):4871 (2022)
Guerra J, Blanchet C, Vieira B, Almeida A, Waerenborgh J, Jones N, Hoffmann S, Tavares P, Pereira A
RgGuinier 4.5 nm
Dmax 17.1 nm
VolumePorod 475 nm3

SASDN28 – DNA-binding protein from starved cells: DgrDpsWT in 50 mM MOPS, 230 mM NaCl pH 7.0

DNA protection during starvation, DPS (Ferritin superfamily) experimental SAS data
GASBOR model
Sample: DNA protection during starvation, DPS (Ferritin superfamily) dodecamer, 270 kDa Deinococcus grandis protein
Buffer: 50 mM MOPS-NaOH, 230 mM NaCl, pH: 7
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22
The Conformation of the N-Terminal Tails of Deinococcus grandis Dps Is Modulated by the Ionic Strength International Journal of Molecular Sciences 23(9):4871 (2022)
Guerra J, Blanchet C, Vieira B, Almeida A, Waerenborgh J, Jones N, Hoffmann S, Tavares P, Pereira A
RgGuinier 4.5 nm
Dmax 20.6 nm
VolumePorod 438 nm3

SASDN38 – DNA-binding protein from starved cells: DgrDpsWT in 50 mM MOPS, 480 mM NaCl pH 7.0

DNA protection during starvation, DPS (Ferritin superfamily) experimental SAS data
GASBOR model
Sample: DNA protection during starvation, DPS (Ferritin superfamily) dodecamer, 270 kDa Deinococcus grandis protein
Buffer: 50 mM MOPS-NaOH, 480 mM NaCl, pH: 7
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22
The Conformation of the N-Terminal Tails of Deinococcus grandis Dps Is Modulated by the Ionic Strength International Journal of Molecular Sciences 23(9):4871 (2022)
Guerra J, Blanchet C, Vieira B, Almeida A, Waerenborgh J, Jones N, Hoffmann S, Tavares P, Pereira A
RgGuinier 4.8 nm
Dmax 20.5 nm
VolumePorod 430 nm3