Browse by ORGANISM: other species

SASDWG3 – MBP-tagged C-terminal domain of CpoS (Candidate inclusion membrane protein)

Candidate inclusion membrane protein (MBP-tagged) experimental SAS data
Candidate inclusion membrane protein (MBP-tagged) Kratky plot
Sample: Candidate inclusion membrane protein (MBP-tagged) tetramer, 235 kDa Chlamydia trachomatis serovar … protein
Buffer: 20 mM Tris-HCl, 50 mM NaCl, 1 mM EDTA, 2% glycerol, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2023 Feb 15
Tetramer formation of CpoS facilitates Inc-Inc interactions during Chlamydia trachomatis infection
Zhen Xu
RgGuinier 7.1 nm
Dmax 30.3 nm
VolumePorod 625 nm3

SASDX39 – Group IIC Intron Domain 1

Group IIC Intron Domain 1 experimental SAS data
DAMMIF model
Sample: Group IIC Intron Domain 1 monomer, 89 kDa Oceanobacillus iheyensis RNA
Buffer: 10 mM MgCl2, 5 mM Na-MES, pH: 6.5
Experiment: SAXS data collected at BM29, ESRF on 2021 Jul 7
Dynamic assembly of a large multidomain ribozyme visualized by cryo-electron microscopy. Nat Commun 16(1):10195 (2025)
Jadhav S, Maiorca M, Manigrasso J, Saha S, Rakitch A, Muscat S, Mulvaney T, De Vivo M, Topf M, Marcia M
RgGuinier 3.8 nm
Dmax 13.0 nm
VolumePorod 188 nm3

SASDX49 – Group IIC intron Domain 1, 2 & 3

Group IIC Intron Domain 1, 2 & 3 experimental SAS data
DAMMIF model
Sample: Group IIC Intron Domain 1, 2 & 3 monomer, 103 kDa Oceanobacillus iheyensis RNA
Buffer: 10 mM MgCl2, 5 mM Na-MES, pH: 6.5
Experiment: SAXS data collected at BM29, ESRF on 2021 Sep 2
Dynamic assembly of a large multidomain ribozyme visualized by cryo-electron microscopy. Nat Commun 16(1):10195 (2025)
Jadhav S, Maiorca M, Manigrasso J, Saha S, Rakitch A, Muscat S, Mulvaney T, De Vivo M, Topf M, Marcia M
RgGuinier 3.6 nm
Dmax 12.0 nm
VolumePorod 195 nm3

SASDX59 – Group IIC intron Domain 1 & 2

Group IIC Intron Domain 1 & 2 experimental SAS data
DAMMIF model
Sample: Group IIC Intron Domain 1 & 2 monomer, 96 kDa Oceanobacillus iheyensis RNA
Buffer: 10 mM MgCl2, 5 mM Na-MES, pH: 6.5
Experiment: SAXS data collected at BM29, ESRF on 2021 Sep 2
Dynamic assembly of a large multidomain ribozyme visualized by cryo-electron microscopy. Nat Commun 16(1):10195 (2025)
Jadhav S, Maiorca M, Manigrasso J, Saha S, Rakitch A, Muscat S, Mulvaney T, De Vivo M, Topf M, Marcia M
RgGuinier 3.6 nm
Dmax 11.0 nm
VolumePorod 179 nm3

SASDX69 – Group IIC intron Domain 1, 2. 3 & 4

Group IIC intron Domain 1, 2, 3 & 4 experimental SAS data
DAMMIF model
Sample: Group IIC intron Domain 1, 2, 3 & 4 monomer, 125 kDa Oceanobacillus iheyensis RNA
Buffer: 10 mM MgCl2, 5 mM Na-MES, pH: 6.5
Experiment: SAXS data collected at BM29, ESRF on 2021 Sep 2
Dynamic assembly of a large multidomain ribozyme visualized by cryo-electron microscopy. Nat Commun 16(1):10195 (2025)
Jadhav S, Maiorca M, Manigrasso J, Saha S, Rakitch A, Muscat S, Mulvaney T, De Vivo M, Topf M, Marcia M
RgGuinier 4.2 nm
Dmax 12.6 nm
VolumePorod 247 nm3

SASDWD7 – SEC-SAXS data of wildtype Melanotaenia fluviatilis apo estrogen receptor alpha ligand binding domain (LBD) at pH 7.5

Estrogen receptor alpha experimental SAS data
DAMMIF model
Sample: Estrogen receptor alpha dimer, 57 kDa Melanotaenia fluviatilis protein
Buffer: 20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5% glycerol, 2 mM TCEP, pH: 7.5
Experiment: SAXS data collected at BioSAXS, Australian Synchrotron on 2024 Nov 9
A ternary switch model governing ERα ligand binding domain conformation. Nat Commun 16(1):10363 (2025)
McDougal DP, Pederick JL, Novick SJ, Jovcevski B, Warrender AK, Pascal BD, Griffin PR, Bruning JB
RgGuinier 2.5 nm
Dmax 9.2 nm
VolumePorod 72 nm3

SASDUW5 – C-terminal domain of Ubiquitinating/deubiquitinating enzyme SdeA (SdeA_CTD)

Ubiquitinating/deubiquitinating enzyme SdeA experimental SAS data
MONSA model
Sample: Ubiquitinating/deubiquitinating enzyme SdeA monomer, 39 kDa Legionella pneumophila subsp. … protein
Buffer: 25 mM Tris-HCl, 200 mM NaCl, 5 mM DTT, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Dec 4
Structural Basis for Membrane Targeting and Secretion of Legionella SidE Ubiquitin Ligases
Ahmed Mohammed
RgGuinier 3.9 nm
Dmax 15.7 nm
VolumePorod 62 nm3

SASDUX5 – Type 4 adaptor protein complex IcmS, IcmW and DotL (IcmS/IcmW/DotLc)

Type 4 adapter protein IcmSType 4 adapter protein IcmW (S9A)Type 4 coupling protein DotL experimental SAS data
MONSA model
Sample: Type 4 adapter protein IcmS monomer, 14 kDa Legionella pneumophila subsp. … protein
Type 4 adapter protein IcmW (S9A) monomer, 17 kDa Legionella pneumophila subsp. … protein
Type 4 coupling protein DotL monomer, 15 kDa Legionella pneumophila subsp. … protein
Buffer: 25 mM Tris-HCl, 200 mM NaCl, 5 mM DTT, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Dec 4
Structural Basis for Membrane Targeting and Secretion of Legionella SidE Ubiquitin Ligases
Ahmed Mohammed
RgGuinier 2.8 nm
Dmax 9.6 nm
VolumePorod 71 nm3

SASDUY5 – C-terminal domain of Ubiquitinating/deubiquitinating enzyme SdeA bound to Type 4 adaptor protein complex IcmS, IcmW and DotL (SdeACTD-IcmSWDotLc complex)

Ubiquitinating/deubiquitinating enzyme SdeAType 4 adapter protein IcmSType 4 adapter protein IcmW (S9A)Type 4 coupling protein DotL experimental SAS data
SREFLEX model
Sample: Ubiquitinating/deubiquitinating enzyme SdeA monomer, 39 kDa Legionella pneumophila subsp. … protein
Type 4 adapter protein IcmS monomer, 14 kDa Legionella pneumophila subsp. … protein
Type 4 adapter protein IcmW (S9A) monomer, 17 kDa Legionella pneumophila subsp. … protein
Type 4 coupling protein DotL monomer, 15 kDa Legionella pneumophila subsp. … protein
Buffer: 25 mM Tris-HCl, 200 mM NaCl, 5 mM DTT, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Dec 4
Structural Basis for Membrane Targeting and Secretion of Legionella SidE Ubiquitin Ligases
Ahmed Mohammed
RgGuinier 3.8 nm
Dmax 14.4 nm
VolumePorod 166 nm3

SASDXH2 – Mammalian translation elongation factor eEF1A2

Mammalian translation elongation factor eEF1A2 experimental SAS data
CHIMERA model
Sample: Mammalian translation elongation factor eEF1A2 monomer, 50 kDa protein
Buffer: 25 mM Tris HCl, 150 mM NaCl, 6 mM βME, 20% glycerol, 0.01mM GDP,, pH: 7.5
Experiment: SAXS data collected at Bruker Nanostar w Excillum source, Department of Chemistry, iNANO building, Aarhus Uinversity on 2023 Mar 21
Dynamics and structural features of the eEF1A1 and eEF1A2 paralogs Nucleic Acids Research 53(21) (2025)
Novosylna O, Shalak V, Dąbrowska K, Patmanidis I, Lozhko D, Bondarchuk T, Schiøtt B, Pedersen J, Knudsen C, Nissen P, Dadlez M, Negrutskii B
RgGuinier 2.6 nm
Dmax 97.1 nm
VolumePorod 60 nm3