Structural bases for the interaction of frataxin with the central components of iron-sulphur cluster assembly.

Prischi F, Konarev PV, Iannuzzi C, Pastore C, Adinolfi S, Martin SR, Svergun DI, Pastore A, Nat Commun 1:95 (2010) Europe PMC

SASDA27 – IcsS, IscU and CyaY dimeric complex

Cysteine desulfurase IscS
Iron-sulfur cluster assembly scaffold protein IscU
Protein CyaY
MWI(0) 146 kDa
MWexpected 141 kDa
log I(s) 1.56×102 1.56×101 1.56×100 1.56×10-1
Cysteine desulfurase IscS Iron-sulfur cluster assembly scaffold protein IscU Protein CyaY small angle scattering data  s, nm-1
ln I(s)
Cysteine desulfurase IscS Iron-sulfur cluster assembly scaffold protein IscU Protein CyaY Guinier plot ln 1.57×102 Rg: 3.5 nm 0 (3.5 nm)-2 s2
(sRg)2I(s)/I(0)
Cysteine desulfurase IscS Iron-sulfur cluster assembly scaffold protein IscU Protein CyaY Kratky plot 1.104 0 3 sRg
p(r)
Cysteine desulfurase IscS Iron-sulfur cluster assembly scaffold protein IscU Protein CyaY pair distance distribution function Rg: 3.5 nm 0 Dmax: 11.9 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Cysteine desulfurase IscS Iron-sulfur cluster assembly scaffold protein IscU Protein CyaY SASREF model

log I(s)
 s, nm-1
Cysteine desulfurase IscS Iron-sulfur cluster assembly scaffold protein IscU Protein CyaY DAMMIF model

Synchrotron SAXS data from solutions of IcsS, IscU and CyaY dimeric complex in 20 mM Tris-HCl 150 mM NaCl 10 mM β-mercaptoethanol, pH 8 were collected on the EMBL X33 beam line at the DORIS III, DESY storage ring (Hamburg, Germany) using a Pilatus 1M-W detector at a sample-detector distance of 2.7 m and at a wavelength of λ = 0.15 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 5.00 mg/ml was measured at 15°C. Four successive 30 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Reduced levels of frataxin, an essential protein of as yet unknown function, are responsible for causing the neurodegenerative pathology Friedreich’s ataxia. Independent reports have linked frataxin to iron–sulphur cluster assembly through interactions with the two central components of this machinery: desulphurase Nfs1/IscS and the scaffold protein Isu/IscU. In this study, we use a combination of biophysical methods to define the structural bases of the interaction of CyaY (the bacterial orthologue of frataxin) with the IscS/IscU complex. We show that CyaY binds IscS as a monomer in a pocket between the active site and the IscS dimer interface. Recognition does not require iron and occurs through electrostatic interactions of complementary charged residues. Mutations at the complex interface affect the rates of enzymatic cluster formation. CyaY binding strengthens the affinity of the IscS/IscU complex. Our data suggest a new paradigm for understanding the role of frataxin as a regulator of IscS functions.

Tags: X33
Cysteine desulfurase IscS
Mol. type   Protein
Organism   Escherichia coli
Olig. state   Dimer
Mon. MW   43.6 kDa
 
UniProt   P0A6B7
Sequence   FASTA
 
Iron-sulfur cluster assembly scaffold protein IscU
Mol. type   Protein
Organism   Escherichia coli
Olig. state   Dimer
Mon. MW   14.5 kDa
 
UniProt   P0ACD4
Sequence   FASTA
 
Protein CyaY
Mol. type   Protein
Organism   Escherichia coli
Olig. state   Dimer
Mon. MW   12.2 kDa
 
UniProt   P27838
Sequence   FASTA